• Shuffle
    Toggle On
    Toggle Off
  • Alphabetize
    Toggle On
    Toggle Off
  • Front First
    Toggle On
    Toggle Off
  • Both Sides
    Toggle On
    Toggle Off
  • Read
    Toggle On
    Toggle Off
Reading...
Front

Card Range To Study

through

image

Play button

image

Play button

image

Progress

1/256

Click to flip

Use LEFT and RIGHT arrow keys to navigate between flashcards;

Use UP and DOWN arrow keys to flip the card;

H to show hint;

A reads text to speech;

256 Cards in this Set

  • Front
  • Back

Prokaryotes

categoryof living cells distinguished by absence of a nucleus. Ex. archaea and(eu)bacteria

ER

membraneenclosed compartment in cytoplasm of eukaryotic cells where lipids and proteinsare made

eukaryotes

cellswith distinct nucleus and cytoplasm

Golgi complex

membraneenclosed organelle in eukaryotic cells that modifies proteins and lipids madein ER and sorts them for transport to other sites

organelles

compartmentsin eukaryotic cells with specialized function

endosomes

membraneenclosed compartment in the cytoplasm of the cell through which materialingested by endocytosis passes on its way to lysosomes

plasma membrane

protein-containinglipid bilayer that surrounds a living cell

lysosome

membraneenclosed organelle that breaks down old proteins/organelles + waste, as well asmolecules taken up by endocytosis; contains digestive enzymes that are mostactive at acid PH found inside these organelles

nucleus

prominent,rounded structure that contains the DNA of a eukaryotic cell

cytoskeleton

systemof protein filaments of a eukaryotic cell that gives cell shape and capacityfor directed movement; composed of actin filaments, intermediate filaments, andmicrotubules

micelle

lipid molecules thatarrange themselves in a spherical form in aqueous solutions

glycolipid

lipids with acarbohydrate attached

hydrophobic effect

tendency of nonpolarsubstances to aggregate in aqueoussolution and exclude water molecules

transmembrane protein

membrane protein thatspans the entire membrane to which it is attached

passive transport

protein transportthat involves transport along concentration gradient (no energy requirement)

uniport

integral membraneprotein involved in facilitated (passive) diffusion; can either be ion channelsor carrier proteins; opened by voltage, stress, ligand gating

simple diffusion

diffusion across cell membrane withoutany proteins to help

symport

type of active transport in which aco-transporter and target solute are transported in same direction but targetmolecule goes against concentration gradient (co-transporter goes withgradient)

facilitated diffusion

passive transport(along gradient) with aid of transmembrane integral proteins

antiport

type of activetransport in which a co-transporter and target solute are transported indifferent directions (solute from lo to hi and co-transporter from hi to lo)

voltage gated channel

protein that allowsspecific ions to cross a membrane in response to a change in membrane potential (nerve/muscle cells)

active transport

transport againstelectrochemical/concentration gradient (requires energy)

ion pump

transmembrane protein that moves ionsagainst concentration gradient

ligand gated channel

ion channelstimulated to open by the binding of a ligand/small molecule such as an ion(neurotransmitters/synapses)

electrochemical gradient

driving force thatdetermines which way an ion will move across a membrane; consists of combinedinfluence of ion’s concentration gradient and membrane potential

Na+/K+ pump

antiporter-liketransmembrane protein; pumps sodium out of cells while pumping potassium intocells; not actually an antiporter since both molecules are moving againstconcentration gradient; nerve responses

stress activated channel

ion channel stimulated to open byapplication of mechanical stress

membrane potential

voltage differenceacross a membrane due to a slight excess of positive ions on one side and aslight excess of negative ions on the other

H+ (proton) pump

transport proteinthat actively moves H+ across membrane, generating a gradient that can be usedto import solutes against concentration gradient

neurotransmitter

signaling moleculesecreted by a nerve cell to a synapse to transmit information to a postsynapticcell

rough ER

region of ERassociated with ribosomes and involved in synthesis of secreted/membrane boundproteins

smooth ER

region of ER notassociated with ribosomes; involved in lipid synthesis

transport vesicles

membrane vesicle thatcarries proteins from one intracellular compartment to another

signal sequence

amino acid sequencethat directs a protein to a specific location in the cell after synthesis

translocators

transmembraneproteins that unfold transported protein so that it can cross the membrane

direct transport

transport through nuclear pores +across membranes (via protein translocators)

microsome

vesicle likeartifacts reformed from pieces of ER when eukaryotic cells are broken up inlaboratory; do not exist in normal cells

vesicular transport

transport viavesicles; from ER onwards or from one compartment of endomembrane system toanother; fundamentally different from direct transport

free ribosomes

ribosomes that are unattached to any membrane and make allof the other proteins encoded by nuclear DNA that aren’t made by ER ribosomes

Signal recognition particle (SRP)

cytosolic protein that recognizes/targets specific proteins to ER; binds to signal sequence of newly synthesized protein

ER membrane bound ribosome

attached to cytosolic side of ER membrane and outer nuclearmembrane (make the proteins that translocate them into the ER)

exocytosis

process by which most molecules aresecreted by cell; molecules packaged by membrane vesicles that fuse with plasmamembrane to release contents

Rab

proteins on surfaceof vesicles recognized by corresponding tethering proteinson the cytosolic surface of target membrane; help in docking/fusion of vesiclesin endocytosis

regulated secretory pathway

starts with synthesis of proteins on ER membraneand their entry into ER; leads through Golgi apparatus to cell surface; atGolgi, a side branch leads off through endosomes to lysosomes

secretion

process by whichsubstances are produced and discharged from a cell for a particular function orfor excretion

vesicle

small, membrane-enclosed, spherical sacin cytoplasm of a eukaryotic cell

cis golgi network (CGN)

section of Golgi thatreceives material from ER

ER retention signal

signal in protein that keeps it in ER

trans golgi network (TGN)

portion of Golgifurthest from ER and from which proteins/lipids leave for lysosomes, secretoryvesicles, or cell surface

coat proteins

proteins that helpform vesicles and come off once they’re formed (ex. Clathrin)

cisternae

flattened membrane disk that makes upGolgi

COP I and II

types of vesicle coatproteins that transports proteins from rough ER to golgi

SNARE

family of membraneproteins responsible for selective fusion of vesicles (v-SNARE) with targetmembrane (t-SNARE)

clathrin

protein that makes upthe coat of a type of transport vesicle that buds from either golgi (outwardsecretory pathway) or from plasma membrane (inward endocytic pathway)

endocytosis

process by whichcells take in materials through an invagination of plasma membrane, whichsurrounds ingested material in a membrane enclosed vesicle

pseudopod

temporary projections of cell membranesfor phagocytosis/endocytosis

adaptin

proteins that mediateformation of vesicles by clathrin-coated pits, through interaction withmembrane bound receptors; also help select cargo

macropinocytosis

form of endocytosisin which a large fluid-filled vesicle, or macropinosome, is punched off cellmembrane and brought into interior of cell

phagosome

vesicle that contains a phagocytosedparticle

dynamin

GTPase responsiblefor pinching off vesicle from plasma membrane during endocytosis/vesicleformation

phagocytosis

process by which materialis engulfed by a cell; prominent in predatory cells but also part of immunesystem (macrophages)

phagolysosome

cytoplasmic body formedby fusion of phagosome (with ingested particles) with a lysosome

early endosome

endosome near plasma membrane

pinocytosis

type of endocytosis in which solublematerials/fluids are taken up from environment and incorporated into vesiclesfor digestion (“cell drinking”)

late endosome

endosomes near nucleus

receptor mediated endocytosis

also called clathrin-dependent endocytosis, is a process by which cells absorb molecules (endocytosis) by the inward budding of plasma membrane vesicles containing proteins with receptor sites specific to the molecules being absorbed.

transcytosis

process by which various macromolecules are transported across the interior of a cell. Macromolecules are captured in vesicles on one side of the cell, drawn across the cell, and ejected on the other side.

lysosome

membrane bound organelle that breaksdown worn out organelles, waste, etc

(macro)autophagy

mechanism of celldegradation of unnecessary or dysfunctional cellular components (autophagosome)

mannose 6 phosphate

molecule bound bylectin in immune system

microautophagy

autophagic pathwaymediated by lysosomal engulfment of cytoplasmic cargo

ubiquitin

regulatory protein;act as a tag on proteins for degradation by proteasome

ubiquitilation

post translationalmodification where ubiquitin is attached to substrate protein; 3 main steps:E1, E2, E3

E1 ubiquitin

step one ofubiquitilation; ubiquitin activating enzymes that catalyze first step ofubiquitilation; E1 enzyme + ATP binds to ubiquitin protein

endoplasmic reticulum associated degradation

Endoplasmic-reticulum-associated protein degradation (ERAD) designates acellular pathway which targets misfolded proteins of the endoplasmic reticulum forubiquitination and subsequent degradation by a protein-degrading complex, called the proteasome.

ubiquitin E2

step 2 ofubiquitilation; ubiquitin carrier/ubiquitin conjugator, forms protein complexwith E3

unfolded protein response (UPR)

cellular stress response related to the endoplasmic reticulum. activated in response to an accumulation of unfolded or misfolded proteins in the lumen of the endoplasmic reticulum. In this scenario, the UPR has three aims: initially to restore normal function of the cell by halting protein translation, degrading misfolded proteins, and activating the signaling pathways that lead to increasing the production of molecularchaperones involved in protein folding. If these objectives are not achieved within a certain time lapse or the disruption is prolonged, the UPR aims towards apoptosis.

proteasome

protein complexesthat degrades unneeded/damaged proteins by proteolysis (process that breakspeptide bonds)

E3 ubiquitin ligase

step 3 in ubiquitilation; ubiquitinprotein ligase that recognizes which protein needs to be tagged and catalyzestransfer of ubiquitin to that target protein to tag for degradation

chaperone proteins

assist in properfolding of proteins; holds misfolded proteins in ER and prevents them from

19S caps (2)

part of proteasome core particle thatcontains multiple ATPase active sites and ubiquitin binding sites; recognizespolyubiquitinated proteins and transfers them to catalyitic core

hsp70

family of ubiquitedproteins that deal with disposal of misfolded proteins

unfoldase

enzyme that catalyzes protein unfolding

hsp60

mitochondrial chaperonesresponsible for transportation and refolding of proteins from cytoplasm intomitochondrial matrix

20S core

core of proteasome

AAA-ATPase

diverse proteinfamily that couple energy provided by ATP hydrolysis to conformational changes

cytoskeleton

networkof protein filaments that extends throughout the cytoplasm; highly dynamic andcontinuously reorganized

intermediate filament

madeup of a family of fibrous proteins; enable cells to withstand mechanical stress

actin filament

thin, flexible protein filament made from chain of globular actinmolecules; essential for cell movement and contraction of muscle cells

microtubule

hollowtube made up of aB tubulin, guide transport; long,stiff cylindrical structure composed of tubulin protein; used to organizecytoplasm and guide intracellular transport of macromolecules + organelles

cell crawling

form of cell movement driven by actin polymerization (think amoeba)

keratin filaments

type of intermediate filament in epithelia cells; provides tensilestrength

tubulins

proteinfrom which microtubules are made of; there are alpha and beta tubulins

centrosome

MOTC;situated near nucleus; duplicates to form the two poles of the mitotic spindle

microtubule organizing center (MTOC)

centrosome

dynamic instability

rapidshrinking and growth of microtubules

kinesins

motorproteins that use energy from ATP hydrolysis to move to + end of microtubule

dyneins

motorproteins that use energy from ATP hydrolysis to move to – end of microtubule

cilia/cilium

hairlikestructure made of microtubules found on surface of eukaryotic cells; movesfluids over surface of cell

flagella/flagellum

long,whiplike structure that propels cell through a fluid medium

treadmilling

critical concentration

phalloidin

drugthat stabilizes polymers during actin polymerization

cytochalasin

drugthat binds to + end of actin filaments and blocks actin polymerization

thymosin

proteinsinvolved in regulating actin assembly; bind free actin monomers to buffer theactin monomer pool

cofilin

stimulatesexchange of ADP for ATPàformationof ATP-actin monomers to be polymerized.

profilin

promotaesremodeling of the actin cytoskeleton that is required for a variety of cellmovements and changes in cell shape.

myosin

promotaesremodeling of the actin cytoskeleton that is required for a variety of cellmovements and changes in cell shape.

myofibril

longcylindrical structure that constitutes contractile element of muscle cell; madeof actin, myosin and accessory proteins

sarcomeres

assemblyof actin and myosin filaments that serves as contractile unit of myofibril inmuscle cell

tropomyosin

rigid, rod-shaped molecule that preventsmyosin heads from associating w/ actin (muscle contraction)

lamellipodia

dynamicsheetlike extension on surface of animal cell; helps in cell crawling

troponin

proteincomplex with Ca2+ sensitive protein involved in regulating muscle contraction, associated with tropomyosin

filopodia

long,thin, actin containing extension on animal cell (cell crawling)m

mitosis

divisionof nucleus of a eukaryotic cell into identical daughter cells

aster

star-shapedarray of microtubules emanating from centrosome/pole of mitotic spindle

cytokinesis

divisionof cytoplasm to complete formation of two identical daughter cells

condensin

proteincomplex; condenses chromosomes/readies them for segregation by mitotic spindle

mitotic spindle

arrayof microtubules + molecules that forms between opposite poles of eukaryoticcell during mitosis and pulls duplicated chromosome sets apart

kinetochore

proteincomplex that assembles on centromere of condensed mitotic chromosome; site towhich spindles attach

spindle pole

centrosomefrom which microtubules radiate to form mitotic spindle

sister chromatid

copyof a chromosome that remains bound to the other copy

cohesin

proteincomplex that holds sister chromatids together after DNA replication in S phase

cell cycle control

networkof regulatory proteins that control cell thru stages of cell division

M Phase

periodof cell cycle during which nucleus + cytoplasm divide

aneuploidy

productof chromosome mis-segregation; eggs contain the wrong number of chromosomes

tumorigenesis

production/formationof a tumor or tumors

tumor suppressor gene

genethat in normal cells inhibits cancerous behavior

cyclin dependent kinases (Cdks)

enzymethat, when complexed with a regulatory cyclin protein, can trigger variousevents in the cell division cycle by phosphorylating specific target proteins

tetraploidy

exampleof polyploidy; chromosomes containing three pairs of homologous chromosomes

cyclins

regulatoryprotein whose concentration rises and falls at specific times during theeukaryotic cell cycle

G1 phase

Gap1 phase of cell cycle; between end of cytokenisis and start of DNA synthesis (Sphase)

S phase

periodduring cell cycle in which DNA is synthesized

mitogen

extracellularsignal molecule that stimulates cell cycle

phosphorylation

additionof a phosphate group to a side chain of a protein, catalyzed by a kinase,serves as a form of regulation that usually alters activity or properties oftarget protein

retinoblastoma (Rb)

mediatesnegative control during cell cycle; releases transcription regulators whenphosphorylated, which are required for cell proliferation

dephosphorylation

removalof a phosphate group; serves as a form of regulation

Cdk inhibitor protein

regulatesCdk activity by blocking assembly of cyclin-Cdk complexes

p53

transcriptionregulator that controls cell’s response to DNA damage, preventing cell fromentering S phase until the damage has been repaired or inducing the cell tocommit suicide if the damage is too extensive

inhibitory kinase (Wee1)

phosphorylatesM cyclin-Cdk complex to inhibit activity of cell cycle

p21

p21-- Cdk inhibitor activated by p53 that is part of cell control system

activating phosphatase

dephosphorylatesM-Cdk complex to reactivate the complex

signal transduction

conversion of animpulse/stimulus from one physical/chemical form to another; process by whichcells convert extracellular signals to intracellular ones

cell surface receptor

proteins on membranethat detect signals and transmit them to the cell’s response machinery

endocrine signaling

hormones are secretedinto the bloodstream and distributed widely throughout body; long range

Notch-Delta pathway

intracellular pathway that triggers adirect route to control gene expression; Notch is a receptor protein that actsas a transcription regulator. Activated by Delta binding (Transmembrane signalprotein on neighboring cell) and cleaves Notch receptor so that it can move tothe nucleus and activate genes --->contactdependent signaling

neuronal signaling

signals transmittedelectrically along a nerve cell axon; causes release of neurotransmittersacross synapse; long range

Wnt pathway

paracrine signaling

cells secrete signalsthat diffuse locally thru extracellular fluid, remaining in the cell thatsecretes them; local mediators on nearby cells

adenomatous polyposis coli (APC)

tumor suppressor geneinactive in cancer cells

autocrine sginaling

form of paracrinesignaling in which cells respond to the signals they produce

B-catenin

contact dependent (cell to cell) signaling

cells make directcontact and bind to receptors on adjacent cells; allows for differentiation ofcells during development

adaptor protein

in between proteinsbetween transmembrane protein and another activated protein

steroid hormone

intracellularreceptor proteins; hydrophobic and pass through membrane to bind to receptorsin cytosol or nucelus

intracellular signaling molecule

molecule thattransduces/transmits signals from within the cell

extracellular signaling molecule

molecule that bindsto outside cell surface receptors to induce a response within the cell

terminal effector

effector proteins

proteins that directly affect cellactivity

intracellular receptor

receptor on theinside cell surface membrane

intracellular signaling pathway

set of proteins and small moleculesecond messengers that interact to relay a signal from the cell membrane to itsfinal destination in the cytoplasm/nucleus

ion channel coupled receptor

type of cell surfacereceptor that changes permeability of membrane to ions

GAP

GTPase activatingproteins; deactivate by promoting GTP hydrolysis

G protein effector

protein kinase

enzymes that catalyze transfer of phosphategroup from ATP to an amino acid side chain on a target proteins

second messenger

small intracellular signalingmolecule generated/released in responseto extracellular signals

protein phosphatase

enzyme that catalyzes removal ofphosphate group from a protein

cyclic AMP

small intracellularsignal molecule generated by ATP in response to hormonal stimulation of cellsurface receptors

cyclic GMP

trimeric G protein

family of proteins that act asmolecular switches in cells

G protein coupled receptor

type of cell surfacereceptor that activates membrane bound G proteins, which then thenactivate/inhibit enzyomes or ion channel in membrane, initiating signalingcascade

adynylyl cyclase

enzyme that catalyzesthe formation of cyclic AMP to ATP; component of intracellular signaling

GEF

guanine nucleotideexchange factor; activate by converting GDP to GTP

protein kinase A (PKA)

enzymes dependent oncAMP levels for activity

phospholipase C

enzyme associated withplasma membrane that generates two small messenger molecules when activated

growth factor

signal thatstimulates growth

inositol phospholipid

phospholipid withinositol sugar attached to head

MAPKKK

first MAP kinase tobe phosphorylated in MAP-kinase signaling module

PIP2

EGF

MAPKK

second map kinase to be phosphorylatedin MAP kinase signaling module

DAG

diacylglycerol; lipidthat remains in plasma membrane after generation by phospholipase C; helpsrecruit and activate protein kinase C

phosphotyrosine

MAP kinase (MAPK)

activated proteinkinase; final kinase in the MAP kinase signaling module

IP3

small messengermolecule generated by phospholipase C; sugar phosphate released into thecytosol and opens Ca2+ channels embedded in ER membrane

IP3 gated Ca2+ channel

oncogene

gene that can cause cancer if overexpressed

protein kinase C (PKC)

protein that phosphorylates targetproteins in response to rise in cytosolic Ca2+ Grb2

enzyme coupled receptors

type of receptor on cell surface thatact as enzymes or associate with enzymes inside cell to activate pathways

Ras

small GTP bindingprotein bound by a lipid tail to the cytoplasmic face of plasma membrane;molecular switch that initiates phosphorylation cascade (MAPKKKs)

receptor tyrosine kinase (RTKs)

type of enzymecoupled receptor; cytoplasmic domain functions as a tyrosine protein kinasewhich phosphorylates tyrosines on specific intracellular proteins

Ras-GEF and Ras-GAP

see above definitionsof GEF and GAP

necrosis

cell death in whichcells empty their contents into extracellular fluid due to acute damage

caspase 9

initiator caspase

apoptosome

protein complex that promotes apoptosis

apoptosis

programmed cell death

initiator caspase

cleaves caspase toactivate executioner caspases

Bcl-2

regulate apoptosis byactivating/inhibiting caspases

caspase 3

executioner caspase

Bax

releases cytochrome cinto cytosol to induce apoptosis

cytotoxic T cells

killer cells involvedin apoptosis

executioner caspase

caspases that can amiplify caspase cascade or break down proteins in cell

Bid

activates intrinsic apoptotic pathway

blebbing

bulging of cell surface duringapoptosis

extrinsic pathway

inresponse to extracellular signal molecules released by killer cells (e.x.cytotoxic T cells)

IAP

—Inhibitor of apoptosis proteins (IAPs); directlyinhibit Caspase 3 and Caspase 9

procaspase

inactive precursor tocaspases; become activated when prodomain is cleaved

intrinsic pathway

PIP3

second messenger rapidly produced at the plasmamembrane in response to growth factor signal

caspase

family of proteases that mediates cell death viaapoptosis

death ligand

protein on surface ofone cell that binds to death receptor of another cell to activate apoptosis

PI3 kinase (PI3K)

phosphoinositide 3-kinase; produce lipid dockingsites on plasma membrane

prodomain

part of caspase that makes it aprocaspase; inactivates it

death receptor

receptor on cell thatactivates apoptosis when bound to death ligand

PTEN

caspase 8

initiator caspase

cytochrome c

protein inmitochondria that is released into cytosol by Bax/Bak to trigger apoptosis

Akt

also called protein kinase B (PKB); promotes growth/survival of cells byinactivating the signaling proteins it phosphorylates

epithelium

claudin

adherens junction

polarity

paracellular channel

desmosome

apical surface

gap junction

hemidesmosome


basal surface


connexon

focal adhesion

basal lamina

intercellular channel

ligand-binding affinity

tight junction

anchoring junction

avidity

basolateral domain

E-cadherin

tumor metastasis

occludin

desmosomal cadherin

,

tissue

cooperative assemblyof cells and matrix woven together to form a distinctive multicellular fabricwith a specific function

fibrillar collagen

made up of collagenfibers

collagen fibers

triple helical fiberssynthesized first as procollagen before it’s cleaved to be a mature collagenfiber, which self assemble into collagen fibrils and are covalently crosslinked to one another by lysyl oxidase (additional tensile strength), and thecollagen fibrils are further packed into collagen fibers; organized byfibroblasts in connective tissues; provide path for cell migration

epithelium

type of tissue that lines cavities andsurfaces of structures throughout body

fibroblast

type of cell that synthesizes ECM andcollagen, role in wound healing,

connective tissue

type of tissue thatsupports, connects or separates different

triple helix

triple stranded ahelices

hydrogel

fibrillar collagenhydrogel used as scaffold material for tissue

GAG

glycosaminoglycans; major structuralcomponent of ECM; polysaccharides with repeating disaccharide units; highdensity of negative charges that attract a large amount of wateràcompressivestrength to tissue

basal lamina

layer of ECM secretedby epithelial cells on which epith

lysal oxidase

covalently cross links collagen fibrilsto form fibers

proteoglycan

proteins that areheavily glycosylated; often connected to

collagen

triple stranded,fibrous protein that is a major component of the extracellular matrix andconnective tissues; it is the main protein in animal tissues

collagen fibril

assembly of cleavedprocollagen

hyaluronan

long GAGs that arelinked to proteoglycans noncovalently to form large GAG-proteoglycan complexes