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256 Cards in this Set
- Front
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Prokaryotes |
categoryof living cells distinguished by absence of a nucleus. Ex. archaea and(eu)bacteria |
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ER |
membraneenclosed compartment in cytoplasm of eukaryotic cells where lipids and proteinsare made |
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eukaryotes |
cellswith distinct nucleus and cytoplasm |
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Golgi complex |
membraneenclosed organelle in eukaryotic cells that modifies proteins and lipids madein ER and sorts them for transport to other sites |
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organelles |
compartmentsin eukaryotic cells with specialized function |
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endosomes |
membraneenclosed compartment in the cytoplasm of the cell through which materialingested by endocytosis passes on its way to lysosomes |
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plasma membrane |
protein-containinglipid bilayer that surrounds a living cell |
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lysosome |
membraneenclosed organelle that breaks down old proteins/organelles + waste, as well asmolecules taken up by endocytosis; contains digestive enzymes that are mostactive at acid PH found inside these organelles |
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nucleus |
prominent,rounded structure that contains the DNA of a eukaryotic cell |
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cytoskeleton |
systemof protein filaments of a eukaryotic cell that gives cell shape and capacityfor directed movement; composed of actin filaments, intermediate filaments, andmicrotubules |
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micelle |
lipid molecules thatarrange themselves in a spherical form in aqueous solutions |
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glycolipid |
lipids with acarbohydrate attached |
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hydrophobic effect |
tendency of nonpolarsubstances to aggregate in aqueoussolution and exclude water molecules |
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transmembrane protein |
membrane protein thatspans the entire membrane to which it is attached |
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passive transport |
protein transportthat involves transport along concentration gradient (no energy requirement) |
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uniport |
integral membraneprotein involved in facilitated (passive) diffusion; can either be ion channelsor carrier proteins; opened by voltage, stress, ligand gating |
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simple diffusion |
diffusion across cell membrane withoutany proteins to help |
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symport |
type of active transport in which aco-transporter and target solute are transported in same direction but targetmolecule goes against concentration gradient (co-transporter goes withgradient) |
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facilitated diffusion |
passive transport(along gradient) with aid of transmembrane integral proteins |
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antiport |
type of activetransport in which a co-transporter and target solute are transported indifferent directions (solute from lo to hi and co-transporter from hi to lo) |
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voltage gated channel |
protein that allowsspecific ions to cross a membrane in response to a change in membrane potential (nerve/muscle cells) |
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active transport |
transport againstelectrochemical/concentration gradient (requires energy) |
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ion pump |
transmembrane protein that moves ionsagainst concentration gradient |
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ligand gated channel |
ion channelstimulated to open by the binding of a ligand/small molecule such as an ion(neurotransmitters/synapses) |
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electrochemical gradient |
driving force thatdetermines which way an ion will move across a membrane; consists of combinedinfluence of ion’s concentration gradient and membrane potential |
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Na+/K+ pump |
antiporter-liketransmembrane protein; pumps sodium out of cells while pumping potassium intocells; not actually an antiporter since both molecules are moving againstconcentration gradient; nerve responses |
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stress activated channel |
ion channel stimulated to open byapplication of mechanical stress |
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membrane potential |
voltage differenceacross a membrane due to a slight excess of positive ions on one side and aslight excess of negative ions on the other |
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H+ (proton) pump |
transport proteinthat actively moves H+ across membrane, generating a gradient that can be usedto import solutes against concentration gradient |
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neurotransmitter |
signaling moleculesecreted by a nerve cell to a synapse to transmit information to a postsynapticcell |
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rough ER |
region of ERassociated with ribosomes and involved in synthesis of secreted/membrane boundproteins |
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smooth ER |
region of ER notassociated with ribosomes; involved in lipid synthesis |
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transport vesicles |
membrane vesicle thatcarries proteins from one intracellular compartment to another |
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signal sequence |
amino acid sequencethat directs a protein to a specific location in the cell after synthesis |
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translocators |
transmembraneproteins that unfold transported protein so that it can cross the membrane |
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direct transport |
transport through nuclear pores +across membranes (via protein translocators) |
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microsome |
vesicle likeartifacts reformed from pieces of ER when eukaryotic cells are broken up inlaboratory; do not exist in normal cells |
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vesicular transport |
transport viavesicles; from ER onwards or from one compartment of endomembrane system toanother; fundamentally different from direct transport |
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free ribosomes |
ribosomes that are unattached to any membrane and make allof the other proteins encoded by nuclear DNA that aren’t made by ER ribosomes |
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Signal recognition particle (SRP) |
cytosolic protein that recognizes/targets specific proteins to ER; binds to signal sequence of newly synthesized protein |
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ER membrane bound ribosome |
attached to cytosolic side of ER membrane and outer nuclearmembrane (make the proteins that translocate them into the ER) |
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exocytosis |
process by which most molecules aresecreted by cell; molecules packaged by membrane vesicles that fuse with plasmamembrane to release contents |
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Rab |
proteins on surfaceof vesicles recognized by corresponding tethering proteinson the cytosolic surface of target membrane; help in docking/fusion of vesiclesin endocytosis |
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regulated secretory pathway |
starts with synthesis of proteins on ER membraneand their entry into ER; leads through Golgi apparatus to cell surface; atGolgi, a side branch leads off through endosomes to lysosomes |
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secretion |
process by whichsubstances are produced and discharged from a cell for a particular function orfor excretion |
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vesicle |
small, membrane-enclosed, spherical sacin cytoplasm of a eukaryotic cell |
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cis golgi network (CGN) |
section of Golgi thatreceives material from ER |
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ER retention signal |
signal in protein that keeps it in ER |
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trans golgi network (TGN) |
portion of Golgifurthest from ER and from which proteins/lipids leave for lysosomes, secretoryvesicles, or cell surface |
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coat proteins |
proteins that helpform vesicles and come off once they’re formed (ex. Clathrin) |
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cisternae |
flattened membrane disk that makes upGolgi |
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COP I and II |
types of vesicle coatproteins that transports proteins from rough ER to golgi |
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SNARE |
family of membraneproteins responsible for selective fusion of vesicles (v-SNARE) with targetmembrane (t-SNARE) |
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clathrin |
protein that makes upthe coat of a type of transport vesicle that buds from either golgi (outwardsecretory pathway) or from plasma membrane (inward endocytic pathway) |
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endocytosis |
process by whichcells take in materials through an invagination of plasma membrane, whichsurrounds ingested material in a membrane enclosed vesicle |
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pseudopod |
temporary projections of cell membranesfor phagocytosis/endocytosis |
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adaptin |
proteins that mediateformation of vesicles by clathrin-coated pits, through interaction withmembrane bound receptors; also help select cargo |
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macropinocytosis |
form of endocytosisin which a large fluid-filled vesicle, or macropinosome, is punched off cellmembrane and brought into interior of cell |
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phagosome |
vesicle that contains a phagocytosedparticle |
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dynamin |
GTPase responsiblefor pinching off vesicle from plasma membrane during endocytosis/vesicleformation |
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phagocytosis |
process by which materialis engulfed by a cell; prominent in predatory cells but also part of immunesystem (macrophages) |
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phagolysosome |
cytoplasmic body formedby fusion of phagosome (with ingested particles) with a lysosome |
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early endosome |
endosome near plasma membrane |
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pinocytosis |
type of endocytosis in which solublematerials/fluids are taken up from environment and incorporated into vesiclesfor digestion (“cell drinking”) |
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late endosome |
endosomes near nucleus |
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receptor mediated endocytosis |
also called clathrin-dependent endocytosis, is a process by which cells absorb molecules (endocytosis) by the inward budding of plasma membrane vesicles containing proteins with receptor sites specific to the molecules being absorbed. |
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transcytosis |
process by which various macromolecules are transported across the interior of a cell. Macromolecules are captured in vesicles on one side of the cell, drawn across the cell, and ejected on the other side. |
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lysosome |
membrane bound organelle that breaksdown worn out organelles, waste, etc |
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(macro)autophagy |
mechanism of celldegradation of unnecessary or dysfunctional cellular components (autophagosome) |
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mannose 6 phosphate |
molecule bound bylectin in immune system |
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microautophagy |
autophagic pathwaymediated by lysosomal engulfment of cytoplasmic cargo |
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ubiquitin |
regulatory protein;act as a tag on proteins for degradation by proteasome |
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ubiquitilation |
post translationalmodification where ubiquitin is attached to substrate protein; 3 main steps:E1, E2, E3 |
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E1 ubiquitin |
step one ofubiquitilation; ubiquitin activating enzymes that catalyze first step ofubiquitilation; E1 enzyme + ATP binds to ubiquitin protein |
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endoplasmic reticulum associated degradation |
Endoplasmic-reticulum-associated protein degradation (ERAD) designates acellular pathway which targets misfolded proteins of the endoplasmic reticulum forubiquitination and subsequent degradation by a protein-degrading complex, called the proteasome. |
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ubiquitin E2 |
step 2 ofubiquitilation; ubiquitin carrier/ubiquitin conjugator, forms protein complexwith E3 |
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unfolded protein response (UPR) |
cellular stress response related to the endoplasmic reticulum. activated in response to an accumulation of unfolded or misfolded proteins in the lumen of the endoplasmic reticulum. In this scenario, the UPR has three aims: initially to restore normal function of the cell by halting protein translation, degrading misfolded proteins, and activating the signaling pathways that lead to increasing the production of molecularchaperones involved in protein folding. If these objectives are not achieved within a certain time lapse or the disruption is prolonged, the UPR aims towards apoptosis. |
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proteasome |
protein complexesthat degrades unneeded/damaged proteins by proteolysis (process that breakspeptide bonds) |
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E3 ubiquitin ligase |
step 3 in ubiquitilation; ubiquitinprotein ligase that recognizes which protein needs to be tagged and catalyzestransfer of ubiquitin to that target protein to tag for degradation |
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chaperone proteins |
assist in properfolding of proteins; holds misfolded proteins in ER and prevents them from |
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19S caps (2) |
part of proteasome core particle thatcontains multiple ATPase active sites and ubiquitin binding sites; recognizespolyubiquitinated proteins and transfers them to catalyitic core |
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hsp70 |
family of ubiquitedproteins that deal with disposal of misfolded proteins |
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unfoldase |
enzyme that catalyzes protein unfolding |
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hsp60 |
mitochondrial chaperonesresponsible for transportation and refolding of proteins from cytoplasm intomitochondrial matrix |
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20S core |
core of proteasome |
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AAA-ATPase |
diverse proteinfamily that couple energy provided by ATP hydrolysis to conformational changes |
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cytoskeleton |
networkof protein filaments that extends throughout the cytoplasm; highly dynamic andcontinuously reorganized |
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intermediate filament |
madeup of a family of fibrous proteins; enable cells to withstand mechanical stress |
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actin filament |
thin, flexible protein filament made from chain of globular actinmolecules; essential for cell movement and contraction of muscle cells |
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microtubule |
hollowtube made up of aB tubulin, guide transport; long,stiff cylindrical structure composed of tubulin protein; used to organizecytoplasm and guide intracellular transport of macromolecules + organelles |
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cell crawling |
form of cell movement driven by actin polymerization (think amoeba) |
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keratin filaments |
type of intermediate filament in epithelia cells; provides tensilestrength |
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tubulins |
proteinfrom which microtubules are made of; there are alpha and beta tubulins |
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centrosome |
MOTC;situated near nucleus; duplicates to form the two poles of the mitotic spindle |
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microtubule organizing center (MTOC) |
centrosome |
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dynamic instability |
rapidshrinking and growth of microtubules |
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kinesins |
motorproteins that use energy from ATP hydrolysis to move to + end of microtubule |
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dyneins |
motorproteins that use energy from ATP hydrolysis to move to – end of microtubule |
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cilia/cilium |
hairlikestructure made of microtubules found on surface of eukaryotic cells; movesfluids over surface of cell |
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flagella/flagellum |
long,whiplike structure that propels cell through a fluid medium |
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treadmilling |
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critical concentration |
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phalloidin |
drugthat stabilizes polymers during actin polymerization |
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cytochalasin |
drugthat binds to + end of actin filaments and blocks actin polymerization |
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thymosin |
proteinsinvolved in regulating actin assembly; bind free actin monomers to buffer theactin monomer pool |
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cofilin |
stimulatesexchange of ADP for ATPàformationof ATP-actin monomers to be polymerized. |
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profilin |
promotaesremodeling of the actin cytoskeleton that is required for a variety of cellmovements and changes in cell shape. |
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myosin |
promotaesremodeling of the actin cytoskeleton that is required for a variety of cellmovements and changes in cell shape. |
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myofibril |
longcylindrical structure that constitutes contractile element of muscle cell; madeof actin, myosin and accessory proteins |
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sarcomeres |
assemblyof actin and myosin filaments that serves as contractile unit of myofibril inmuscle cell |
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tropomyosin |
rigid, rod-shaped molecule that preventsmyosin heads from associating w/ actin (muscle contraction) |
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lamellipodia |
dynamicsheetlike extension on surface of animal cell; helps in cell crawling |
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troponin |
proteincomplex with Ca2+ sensitive protein involved in regulating muscle contraction, associated with tropomyosin |
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filopodia |
long,thin, actin containing extension on animal cell (cell crawling)m |
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mitosis |
divisionof nucleus of a eukaryotic cell into identical daughter cells |
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aster |
star-shapedarray of microtubules emanating from centrosome/pole of mitotic spindle |
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cytokinesis |
divisionof cytoplasm to complete formation of two identical daughter cells |
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condensin |
proteincomplex; condenses chromosomes/readies them for segregation by mitotic spindle |
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mitotic spindle |
arrayof microtubules + molecules that forms between opposite poles of eukaryoticcell during mitosis and pulls duplicated chromosome sets apart |
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kinetochore |
proteincomplex that assembles on centromere of condensed mitotic chromosome; site towhich spindles attach |
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spindle pole |
centrosomefrom which microtubules radiate to form mitotic spindle |
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sister chromatid |
copyof a chromosome that remains bound to the other copy |
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cohesin |
proteincomplex that holds sister chromatids together after DNA replication in S phase |
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cell cycle control |
networkof regulatory proteins that control cell thru stages of cell division |
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M Phase |
periodof cell cycle during which nucleus + cytoplasm divide |
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aneuploidy |
productof chromosome mis-segregation; eggs contain the wrong number of chromosomes |
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tumorigenesis |
production/formationof a tumor or tumors |
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tumor suppressor gene |
genethat in normal cells inhibits cancerous behavior |
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cyclin dependent kinases (Cdks) |
enzymethat, when complexed with a regulatory cyclin protein, can trigger variousevents in the cell division cycle by phosphorylating specific target proteins |
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tetraploidy |
exampleof polyploidy; chromosomes containing three pairs of homologous chromosomes |
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cyclins |
regulatoryprotein whose concentration rises and falls at specific times during theeukaryotic cell cycle |
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G1 phase |
Gap1 phase of cell cycle; between end of cytokenisis and start of DNA synthesis (Sphase) |
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S phase |
periodduring cell cycle in which DNA is synthesized |
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mitogen |
extracellularsignal molecule that stimulates cell cycle |
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phosphorylation |
additionof a phosphate group to a side chain of a protein, catalyzed by a kinase,serves as a form of regulation that usually alters activity or properties oftarget protein |
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retinoblastoma (Rb) |
mediatesnegative control during cell cycle; releases transcription regulators whenphosphorylated, which are required for cell proliferation |
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dephosphorylation |
removalof a phosphate group; serves as a form of regulation |
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Cdk inhibitor protein |
regulatesCdk activity by blocking assembly of cyclin-Cdk complexes |
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p53 |
transcriptionregulator that controls cell’s response to DNA damage, preventing cell fromentering S phase until the damage has been repaired or inducing the cell tocommit suicide if the damage is too extensive |
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inhibitory kinase (Wee1) |
phosphorylatesM cyclin-Cdk complex to inhibit activity of cell cycle |
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p21 |
p21-- Cdk inhibitor activated by p53 that is part of cell control system |
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activating phosphatase |
dephosphorylatesM-Cdk complex to reactivate the complex |
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signal transduction |
conversion of animpulse/stimulus from one physical/chemical form to another; process by whichcells convert extracellular signals to intracellular ones |
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cell surface receptor |
proteins on membranethat detect signals and transmit them to the cell’s response machinery |
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endocrine signaling |
hormones are secretedinto the bloodstream and distributed widely throughout body; long range |
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Notch-Delta pathway |
intracellular pathway that triggers adirect route to control gene expression; Notch is a receptor protein that actsas a transcription regulator. Activated by Delta binding (Transmembrane signalprotein on neighboring cell) and cleaves Notch receptor so that it can move tothe nucleus and activate genes --->contactdependent signaling |
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neuronal signaling |
signals transmittedelectrically along a nerve cell axon; causes release of neurotransmittersacross synapse; long range |
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Wnt pathway |
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paracrine signaling |
cells secrete signalsthat diffuse locally thru extracellular fluid, remaining in the cell thatsecretes them; local mediators on nearby cells |
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adenomatous polyposis coli (APC) |
tumor suppressor geneinactive in cancer cells |
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autocrine sginaling |
form of paracrinesignaling in which cells respond to the signals they produce |
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B-catenin |
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contact dependent (cell to cell) signaling |
cells make directcontact and bind to receptors on adjacent cells; allows for differentiation ofcells during development |
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adaptor protein |
in between proteinsbetween transmembrane protein and another activated protein |
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steroid hormone |
intracellularreceptor proteins; hydrophobic and pass through membrane to bind to receptorsin cytosol or nucelus |
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intracellular signaling molecule |
molecule thattransduces/transmits signals from within the cell |
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extracellular signaling molecule |
molecule that bindsto outside cell surface receptors to induce a response within the cell |
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terminal effector |
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effector proteins |
proteins that directly affect cellactivity |
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intracellular receptor |
receptor on theinside cell surface membrane |
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intracellular signaling pathway |
set of proteins and small moleculesecond messengers that interact to relay a signal from the cell membrane to itsfinal destination in the cytoplasm/nucleus |
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ion channel coupled receptor |
type of cell surfacereceptor that changes permeability of membrane to ions |
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GAP |
GTPase activatingproteins; deactivate by promoting GTP hydrolysis |
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G protein effector |
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protein kinase |
enzymes that catalyze transfer of phosphategroup from ATP to an amino acid side chain on a target proteins |
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second messenger |
small intracellular signalingmolecule generated/released in responseto extracellular signals |
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protein phosphatase |
enzyme that catalyzes removal ofphosphate group from a protein |
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cyclic AMP |
small intracellularsignal molecule generated by ATP in response to hormonal stimulation of cellsurface receptors |
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cyclic GMP |
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trimeric G protein |
family of proteins that act asmolecular switches in cells |
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G protein coupled receptor |
type of cell surfacereceptor that activates membrane bound G proteins, which then thenactivate/inhibit enzyomes or ion channel in membrane, initiating signalingcascade |
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adynylyl cyclase |
enzyme that catalyzesthe formation of cyclic AMP to ATP; component of intracellular signaling |
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GEF |
guanine nucleotideexchange factor; activate by converting GDP to GTP |
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protein kinase A (PKA) |
enzymes dependent oncAMP levels for activity |
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phospholipase C |
enzyme associated withplasma membrane that generates two small messenger molecules when activated |
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growth factor |
signal thatstimulates growth |
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inositol phospholipid |
phospholipid withinositol sugar attached to head |
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MAPKKK |
first MAP kinase tobe phosphorylated in MAP-kinase signaling module |
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PIP2 |
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EGF |
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MAPKK |
second map kinase to be phosphorylatedin MAP kinase signaling module |
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DAG |
diacylglycerol; lipidthat remains in plasma membrane after generation by phospholipase C; helpsrecruit and activate protein kinase C |
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phosphotyrosine |
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MAP kinase (MAPK) |
activated proteinkinase; final kinase in the MAP kinase signaling module |
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IP3 |
small messengermolecule generated by phospholipase C; sugar phosphate released into thecytosol and opens Ca2+ channels embedded in ER membrane |
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IP3 gated Ca2+ channel |
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oncogene |
gene that can cause cancer if overexpressed |
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protein kinase C (PKC) |
protein that phosphorylates targetproteins in response to rise in cytosolic Ca2+ Grb2 |
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enzyme coupled receptors |
type of receptor on cell surface thatact as enzymes or associate with enzymes inside cell to activate pathways |
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Ras |
small GTP bindingprotein bound by a lipid tail to the cytoplasmic face of plasma membrane;molecular switch that initiates phosphorylation cascade (MAPKKKs) |
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receptor tyrosine kinase (RTKs) |
type of enzymecoupled receptor; cytoplasmic domain functions as a tyrosine protein kinasewhich phosphorylates tyrosines on specific intracellular proteins |
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Ras-GEF and Ras-GAP |
see above definitionsof GEF and GAP |
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necrosis |
cell death in whichcells empty their contents into extracellular fluid due to acute damage |
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caspase 9 |
initiator caspase |
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apoptosome |
protein complex that promotes apoptosis |
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apoptosis |
programmed cell death |
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initiator caspase |
cleaves caspase toactivate executioner caspases |
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Bcl-2 |
regulate apoptosis byactivating/inhibiting caspases |
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caspase 3 |
executioner caspase |
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Bax |
releases cytochrome cinto cytosol to induce apoptosis |
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cytotoxic T cells |
killer cells involvedin apoptosis |
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executioner caspase |
caspases that can amiplify caspase cascade or break down proteins in cell |
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Bid |
activates intrinsic apoptotic pathway |
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blebbing |
bulging of cell surface duringapoptosis |
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extrinsic pathway |
inresponse to extracellular signal molecules released by killer cells (e.x.cytotoxic T cells) |
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IAP |
—Inhibitor of apoptosis proteins (IAPs); directlyinhibit Caspase 3 and Caspase 9 |
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procaspase |
inactive precursor tocaspases; become activated when prodomain is cleaved |
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intrinsic pathway |
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PIP3 |
second messenger rapidly produced at the plasmamembrane in response to growth factor signal |
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caspase |
family of proteases that mediates cell death viaapoptosis |
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death ligand |
protein on surface ofone cell that binds to death receptor of another cell to activate apoptosis |
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PI3 kinase (PI3K) |
phosphoinositide 3-kinase; produce lipid dockingsites on plasma membrane |
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prodomain |
part of caspase that makes it aprocaspase; inactivates it |
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death receptor |
receptor on cell thatactivates apoptosis when bound to death ligand |
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PTEN |
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caspase 8 |
initiator caspase |
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cytochrome c |
protein inmitochondria that is released into cytosol by Bax/Bak to trigger apoptosis |
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Akt |
also called protein kinase B (PKB); promotes growth/survival of cells byinactivating the signaling proteins it phosphorylates |
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epithelium |
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claudin |
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adherens junction |
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polarity |
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paracellular channel |
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desmosome |
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apical surface |
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gap junction |
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hemidesmosome |
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basal surface |
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connexon |
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focal adhesion |
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basal lamina |
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intercellular channel |
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ligand-binding affinity |
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tight junction |
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anchoring junction |
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avidity |
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basolateral domain |
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E-cadherin |
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tumor metastasis |
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occludin |
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desmosomal cadherin |
, |
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tissue |
cooperative assemblyof cells and matrix woven together to form a distinctive multicellular fabricwith a specific function |
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fibrillar collagen |
made up of collagenfibers |
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collagen fibers |
triple helical fiberssynthesized first as procollagen before it’s cleaved to be a mature collagenfiber, which self assemble into collagen fibrils and are covalently crosslinked to one another by lysyl oxidase (additional tensile strength), and thecollagen fibrils are further packed into collagen fibers; organized byfibroblasts in connective tissues; provide path for cell migration |
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epithelium |
type of tissue that lines cavities andsurfaces of structures throughout body |
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fibroblast |
type of cell that synthesizes ECM andcollagen, role in wound healing, |
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connective tissue |
type of tissue thatsupports, connects or separates different |
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triple helix |
triple stranded ahelices |
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hydrogel |
fibrillar collagenhydrogel used as scaffold material for tissue |
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GAG |
glycosaminoglycans; major structuralcomponent of ECM; polysaccharides with repeating disaccharide units; highdensity of negative charges that attract a large amount of wateràcompressivestrength to tissue |
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basal lamina |
layer of ECM secretedby epithelial cells on which epith |
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lysal oxidase |
covalently cross links collagen fibrilsto form fibers |
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proteoglycan |
proteins that areheavily glycosylated; often connected to |
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collagen |
triple stranded,fibrous protein that is a major component of the extracellular matrix andconnective tissues; it is the main protein in animal tissues |
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collagen fibril |
assembly of cleavedprocollagen |
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hyaluronan |
long GAGs that arelinked to proteoglycans noncovalently to form large GAG-proteoglycan complexes |