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477 Cards in this Set

  • Front
  • Back
what family is the rhiniovirus
picorna
small naked ichosohedral
what are the two major causes of gastroenteritis
roto and noro virus
what are the characteristics of the rhinovirus
115 serotypes, acid labile, cytopathic, optimum replciation at 33 vs37 C

limited to upper respiratory infections.
what are the intestinal normal flora
e. coli
klebsiella
proteus
enterococcus
candida
What does the high number of serotypes of rhinovirus mean
that even if u gain immunity to one ur still vulnerable to others this is why people get colds so often
what class of virus is roto
reoviridae
sgmented DsRNA
naked icosohedral capsid
fecal oral
what is the characteristics of the cornavirus
+ssRNA lipid enveloped
what is the leading cause of lower resp. inf.
step pneumo
what are the two major causes of the common cold
rhino virus
corona virus
what does Rotavirus look like
wheel with spokes
should you prescribe antibiotics for the common cold
no, the vast majority are caused by viruses

group B strep is the only one that causes cold like symptoms and only account for 10% of infection
what is the predominant cause of UTI
e. coli
how is the virus transmitted
human to human vir respiratory secretions
2-3 day incubation
what is rota the major cause of
vomiting and diarrhea in children
when is the rhiniovirus most common
what about corona
rhino year round
corona winter
what are the three most common human parasites
ascaris lumbricoides
hookworms
trichuris trichiura
what is the treatment for common cold
antihistimes over the counter not very good mainly just have to live with it
how are vacines made for rota
animal human reasortment create live attenuated
what is needed for e. coli to invade the blood stream
capsule espeacially K1
is there any immunity to virus
not really secretory IgA protects but is not life long

this is why there are no vaccines for virus
what is the season peak for roto
winter spring
what are the properties of the adenoviruses
naked icosahedral capsid
what does strep pneumo cause
pneumonia
menegitis
otitis media
how are adenoviruses transmited
rispiratory and fecal oral
how is roto diagnosed
ag capture ELISA done only in the winter and spring
what are the symptoms of the infection in adenovirues
GI tract infection is asymptomatic but infection of respriatory tract is symptomatics
what is the most common cause of bacterimic sepsis
e. coli
what does adenovirus cause
acute respirtitory disease
mild upper respiratory tract syndromes(tonsils and adenoids of children)
what are the main symptoms of roto
diarrhea, fever , vomiting
1-3 day incubation
what are some characteristics of the acute respirtatory disease cause by adenovirus
two types 4, and 7
most common in winter, and military
type 14 common in young adults
causes penmonia severe and sometimes fatal in childrean
what class are mycobacterium tuberculosis
rod shaped aerobic

ACID FAST(red on blue background)
what adeno virus types cause what
acute respiratory disease-type 4,7,14
pnemonia- type 3, 7(kids) 4,7 (adults)
mild upper respiratry tract syndomes-1,2,5,6
pharyngoconjuctiveal fever-summer infection kids, types 3,7
how long is roto infective
about 11 days starting 1 day before symptoms and lasting till about 5 days after symptoms end
what are the nonrespiratory adenoviral syndrome
epedimec keratoconjuctivitis: types 8, 37 and 19
acute hemorrhagic cystitis: young boys types 11, 21
cervicitis and urethritis: type 37
gastroenteritis: infants types 40, 41, and 31
pediatric transplant recipients: adenovirus infection associated with higher rate of complicasion and organ rejection
where can e. coli infect
GI- unique strain EHEC ETEC
UTI-normal flora
blood- leads to systemic
skin- can infect wounds
what does paramyxoviridae cause
measles
mumple
respiratory syncytial virus
parainfluencza
what is the second leading cause of gastroenteritis in children
noroviruses, major cause in older children and adults
what is a unique formation in the paramyxociridae
syncytia formation
what type of hemolysis does strep pneumo cause
alpha hemolysis
how are measle mumps rubella spread
respiratory route droplet spread and contaminated surface
what is the major infection caused by foodborne illness
norovirus
when is the peak time for measles mumps rubella
winter/spring
how do u diagnose ecoli UTI
nitrite
luiikocyte esterase
gram stain
culture
sometime just treat them based on probablity
can measles mumps rubella be prevented
yes there are vaccines(live attenuated) and one time getting the disease provide life long immunity
6months immunity in newborns
what are the symptoms of norovirus
30% asyomptomatic
acute onset vomiting
non bloody diarrhea
incubate 24-48 hours
abdominal cramps
nausea, fever
headache
can occur any time of the year in any age group
what are the 4 Cs of measles
cough
coryza,-rash on face that coelese
conjunctivitis
Kopliks spots -grains of sand in mouth diagnostic
what is the most common parasite in the US ranked 1 -6
1.pinworms
2 toxoplama-can pass to fetus problems in eye
3. trichomonas vaginalis, femal venereal disease
4. head lice
5. Giardia-diarrheal diease
6. inetestinal amoeba, can cause dysentery
what are some complications of measles
fatal pneumonia
otitis media
post infectino encephalomyelitis
subacute scelersing panencephalitis(rare)
what is the treatment for norovirus
usually clears on own
fluid and electrolyte therapy
what are the symptoms of mumps
swollen salivary glands
how do u treat e. coli
extended specturm beta lactamases allow e. coli to be resistant to beta lactams and even 3rd gen cephalosporins

sensitive to carbapenems and beta lactamase inhibitiors

UTI-first line treatment is TMP-SMX(20% resistant)
sepsis/menigitsi- 2nd and 3rd gen cephalosporins

antisepsis drugs like CXigis
what are the complication of mumps
orchitis
oophoritis
meningitis
hearing loss
arthritis
acute pancreatitis
how is norovirus diagnosed
RT-PCR on stool or emesis not commonly used
most often not diagnosed
what does RSV cause
bronchiolitis pneumonia
winter spring
Viridans strep can cause what when spread to the blood stream
endocraditis
prosthetic join infection
abscesses, brain, liver, lung, abdomin
parainfluenza types 1 and 2 cause flue when
around fall
what is the second most common cause of UTI
Klepsiella pneumonaie
also can cause pneumonia
how is RSV, parainfluenza and adenoviruses diagnosed
antigen detection kit assay
RT-PCR and PCR based test of respiratory specimen to detect
what can lead to hepatitus other than Hep A B C D E in immunocomprimised
human herpers viruses espeacially CMV
how is measles treated
vit A
what is a common symptom in klebsiella pneumoniae
red jelly like sputum
what are the properties of rubella
lipid enveloped icosahedral capsid with + ssRNA

humna to human transmission
what is the morphology of strep pneumo
lancet shaped gram pos diplococci
what are the symptoms of rubella
mild measle like symptoms rash on face spotty
what is kelbsiella resistant to
extended spectrum beta lactamase
Carbapenase resistant
what is the major risk of rubella
congenital rubella syndrome
deafness
visual defects
congental heart defects
what is the diffent types of host
definitive host-sexually mature adult parasite lives here
intermediate host- parasites lives in host at some point in its life cycle
accidental host- infection by a parasite that normally lives in something else
how is congenital rubella syndrome diagnosed
anti rubbella IgM antibody capture ELISA from newborn serum
what bacteria is often causing kidney stones
proteus
what are hemaglutinin and neuraminidase
membrane glycoprotiens that are used for vaccines and constantly undergo antigenic drift
what are teh virulence factors of strep pneumo
cellular antigens
-peptidoglycan
-teichoic acid
-lipteichoic acid

Major virulence factor is antiphagocytic CAPSULE 83 different types

pneumolysin
IgA protease
what are the 3 types of influenza
type A-(many subtypes)in human, mammals and birds causes seasonl epidemcis almost every year
Type B- only in human, causes epidemics
type C - infects human but not clinically important
what are some bacteria other than e. coli and klebsilla that cause UTI
enterobacter
providencia
serratia
citrobacter
what are the only types of influenzae A that are transmited human to human
H1-H3
what are some diseases caused by mycobacterium
TB and leprosy
what is the major cause of serious lower respiratory dieases
influenza A and B
what is the vaccine target for strep pneumo
the caspsule
what are the symptoms of influenza brought on by
TNF - alpha inflammatory
what is a generality about intracellua and extracellualr parasites
extracellualr compete for nutreint
intraceltual kill cells
what are the major symptoms of influenza
fever, chills, aches, pnemonia

NO NAUSA
what is pneumolysin
oxygen-labile hemolysin that kills phagocytes produced by s. pneumo
how is influenza diagnosed
nucleic acid specific assays
rapid antigen capture ELISA useful for defining antiviral treatment.
Gp120/gp41
they bind to the cells to cause the infection
what is the peak month for influenza
february
what is the transmission of s. pneumo
human to human
in lungs goes to ear
aspiration
what are the major antivirals used for influenza
amantadine and rimantadine block uncoatin and nuclear transport
neuramindidase inhibitors(prophalaxis)
block the final stages of virion budding
how is parasites diagnosed
microscopic exam of feces
pt history
serological test-toxoplamsa,a dn trichomonas
PCR-plasmodium falciparum
who should not get flu vaccine
6mo younger
egg allergy really bad
what makes one vulnerable to encapsulated bacteria
asplenia
what are upper resp. symptoms

lower?
upper-sneezing, coughing,

lower- wheezing
what species of mycobacterium cant be grown on agar
m. laprae
when is the most common time for respriratory disease
dec, jan, feb

mainly RSV
what is the most common cause of otis media and adult menigitis
s. pneumo
6 mo URI with FEVER and wheezing ?
bronchiolitis probably RSV
treatment for parasites is
metronidizole
benzamidazoles
two yo with barking cough URI spasmodic cough
laryngotracheobronchitis
rusty sputum is indicative of what
s. pneumo
12 yo with sudden fever headache, myalgias cough
acute influencza virus
which hepatitis viruses have RNA genomes
A
C
D
E
what are some complication of pneumonia
plural effusion(empyema pus)
bacteremia with menignitis
endocarditis
pericarditis
specit arthritis
tissue infection
what is intestinal ameoba
entamoeba histolytica- causes amoebic dysentery
what is the two most common causes of URTI, pneumonia, menigitis
s. pneumo
Haemophilus influenzae
where are mycobacteria found
transmission from the environment
grow in macrophages in host
how is s. pneumo diagnosed
sputum, blood, CSF
gram stain
antgen detection kits fro urine
culture on blood agar shows alpha hemolysis mucoid colonies
capsule serotyping
what is atrial amoeba
naegleria fowleri-ameci menigoencephalitis
how is s. pneumo treated
penicillins
some are resistant then treat with vancomycin
is salmonella normal flora in humans
no
how is the s. pneumo vaccine made
purified capsule from 23 most common strains -pnoumovax
prevnar is a conjugate vaccine that is used in infants to 5 yrs.
What are the unique features of the amoeba
have two forms adult trophozoite and the environmental stabel cyst
what class is haemophilus
gram neg coocobacilii
how long does it take for m. tuberculossis to grow on agar
weeks
why is haemophilus uncommon now
conjugate vaccine has wiped it out almost completley
E. histolytica has wat virulence factro
secretes multiple proteinases and granuloysins lik enzymes that degrades cells
where is h. haemophilus
normal flora
which hep viruses are naked icosahedral
picorna hep a

calici like hep E
what is another bacteria other than strep pneumo that is a twin of haemophilus in that it causes URI , otitis media and meningitis in children
moraxella catarrhalis
how are ameoba transmitted
cysts ingested from food or water

fecal oral
what makes h. influenczae difficult to diagnose
doesnt grow in regular blood agar
much use special media xfactor hemin and vfactor choclate agar

requires increased CO2
what are the characters of nocardia
filiments long rods with branching

ACID FAST

intracellular in macrophages
what are the virulence factors of H. influenczae
no O antigen
has fimbraie
CAPSULE major virulence factor
exo-enxymes
-IgA protease
-beta lactamase
what does e. histoyltica cause
amoebic dystentery
Inflammatory bowel diease
what serotype of H. influenczae is most virulent
type B
what does tat and rev do
RNA synth. and trans to cytoplasm
how is H. influenzae transmitted
normal flora human to human transmission
how is e. histolytica diagnosed
present with radual weeks of bloody diarrhea abdominal pain and tenderness
rarely fever
revent travel to tropical place

direct microscopic observation shows ingested RBCs in the ameoba
why is the window of susceptabilty to H. influenzae 6mo. to 2 yrs
transplacent antibody at first and then takes about 2 yrs to develope own antibodies
what does nocardia cause
TB like disease
what does H. influenzae cause
URT
otitis media
sinusitis
conjuncivitis
chronic bronchitis
how is N. Fowleri diagnosed
sudden headache altered taste and perception can progress to fatal coma in 4 to 6 says usually in spas and sauna

examin for neutrophils in cerebrolspinal fluid and amoeba with absence of bacteria by gram staining
what type of h. influenzae did the vaccine make uncommon
type b
that caused pnemnia
cellulitis
epiglotitis
septicemia
which hep virus is lipid enveloped
hep c
how is H. influenzae diagnosised
gram stains-gram neg baccilicoccis
culture -with special agar
How are ameobas treated
E. histolytica -metronidizole
N. fowerli-amphotericin B
hwo is H. influenzae treated
use 3rd gen cephalosporins
bc of the beta lacrimase
what is the character of rhodococcus qui
short rods and cocci

ACID FAST

causes TB like disease
what class are mycoplasms
small prokaryotes with no cell wall
what is ascaris lumbricoides aka
common round worm the most common parasite worldwide
what is the hard part in diagnosing mycoplasm
takes a long time to culture and need speacial augars and requrie sterols
what is cryptococcus and pneumoscytis associated with
immunocomprimised and AIDS
what is indicitave of mycolplasms
fried egg colonies small
how do u diagnose worm infections
high eosinophilia, ground itch, cough, fever, muscle pain, fatigue

serology can take months

microscopic exam of perianal area on scotch tape
what is an atypical pneumonia
any pnemonia that does not grow on normal agar
what are the characteristics of m. tuberuclosis
slender, straight or crved rods, filamnets

ACID fast stain
what are the virulence factors of mycoplasms
cards toxins-cause vacules
how is pin worm treated
mebendazole

petrolium jelly
what age group is mycoplams most common in
school age to adult
how long after exposure do u show symptoms of hep A
1 to several months
clincical manifestation of mycoplasm
pharyngitis that spreads to treacheobronchitis
what are the virulence factors of the round worms
extremely hard to kill eggs
what does the xray look like in mycoplasm pneumonia
patchy infiltrate
what are the virulence factors fo m. tuberculosis
obligate aerobe
intracellular growth in macrophages
how is mycoplams diagnosided
throat swab has neg routine culture
PCR is best fastest
what are some symptoms of round worm infection
insomnia, abdominal pain
malnutrition
what is the treatment of mycoplasm
erythromycin, azithromycin, clarithromycin
what is nef protien
important for pathogenicity
what is the diferential for pharyngitis
strep pyogenes
mycoplamsm pneumonia
bordetella pertussis
netseria gonorrheae
how is diagnosed round worm
eggs or even adult worms found in vomit and feces
what class are bordetella
small gram neg coccobacili
what is the PPD
purified protien derivative that u develop antibodies to if u have TB
why is boretella hard to diagnose
requires special media for initial growth and grow slowly
how hook worm transmitted
larvae enter through skin typically foot causeing itching migrate fhrough blood to lungs
why bordetella rare now
whooping cough is now vaccinated
how do u diagnos hep A
antibody capture ELISA/EIA to detect serum anti -HAV IgM indicative of current/recent infections
what causes whooping couph
b. pertussis
how is hook worm diagnosed
eggs in stool not seen til 5 -7 weeks of infection
what are teh virulence factors of b. pertussis
endotoxin
fimbrial hemagglutinin
-essential for colonization and addherence to epithelias surface
pertussis toxin-most important toxin
tracheal cytotoxin
adenylate cyclase toxin-also inhibts monocyts and neutrophil by incresing cAMP
what make mycobacterial acid fast
the long chain glucocarbohydrate acids
what does pertussis toxin do
inhibits moncyte and neutrophil activation and killing by increaseing cAMP

causes lymphocytosis* diagnostic
how is hook worm treated
mebendazole
anemia treated with iron suppliment
how is whooping cough transmitted
human to human via droplets
what does salmonella typhimurium and enteritidis cause
gastroenteritis
what are the two stages of whooping cough(b. pertussis)
cartarrhal stage- 7-10 day incubation period with mild symptoms of uncomplicated URTi, highly infectious
paroxysmal stage- repeated cough without breathing within inspiratinoal whooping when breath is taken can lead to anoxia in infants
what are the clinical manifestatino of whip worm
hatch instide the small intestine burrow into the villus
4 year life span
abdominal pain, distention bloody or mucous filled diarrhea severe infectino can lead to rectal prolapse
growth retardation, weight loss, nutrional deficiencies, and anemia
what is the clinical presentation
whooping cough
no gram staining
PCR rapid is best
culture can be done with special media but takes a long time
how is TB transmitted
person to person by inhalation of droplets, survives for long periods in air and surfaces
what is the treatment of b. pertussis
TMP-SMX(erythromycin
how do u diagnos whip worm
stool exam colonoscopy
what is in the DTP
diphtheria
tetanu
aP-acellular pertussis

vaccine is effective till teen years

need to take Tdap to boost as an adult.
what is antiviral IgG indicative of
past infection
how do u treat whip worm
combined mebendazole with ivermectin
treatment with imodium increases amount of drug contact with the parasites
what are the clincal aspect of TB
primary infectino-latent asymptomacit
spreads to lymph nodes then to blood to spleen and liver still asymptomatic

immune system kicks in then granulomatous inflammations occurs everywhere TB is located in the body.
what is the most likely to encounter parasite in kentucky and tennessee
the threadworm
strongyloides stercoralis
pol does what
encodes reverse transcriptase major target of NRTIs
what are three other types of nematodes other than the most common ones
toxocara-mainly in animals
trichinella-cysts in pigs consumed
wuchereria bancrofti- tropical areas with 1 year incubation comes from misquitoes
what is reinfection TB
the causeating granulomas filled with TB burst and respread the infection
what is the most common tape worm
taenia solium gotten by eating uncooked meat
diagnosed by find worm seg in stools requires surgical excisino
hep A is what type of immunization
active immunization with inactiveated virus

passive immunization with normal human IG for post exposure protection
what are the 3 blood fluke
mansoni, japonicum, haematobium
colonized by a form called cercariae
what are symptoms of TB
fever fatigue, anorexia, cough,
what do the blood flukes cause
schistosomiasis causes immune response which causes bad tissue damage

diagnosed with eggs in stool

prazquantel can treat it

highly fatal disease
what bacteria infect the stomach
H. hylori
what is miliary TB
when the TB spreads everywhere brain, menegies etc.
what type of virus is hep E
small nakes icosohedral
diagnosis of M. tuberculosis
first check for acid fast
culture-take weeks
PPD checks immune status
quantiferon-TB dont have to come back

PCR used to confirm after acid fast test
what is the primary receprto for attachment of HIV1
CD4

CCR5
what is the treatment for TB
1. isoniazid, rifapmin, pyrazinamid
2. fluorquinolones, aminoglycosides

MDRstrain- resistan to at least 2 first ling

xDR strains- resistant to 2nd line
where is hep E common
parts of africa, latin america, asia
prevention of TB
isoniazid prevention prophalaxis
what causes typoid fever
s. typhi
s. paratyphi
what is the key diagnostic test for Hep B
HBsAg
how is immune to HIV
mutant CCR5
usually european whites
what is anti-HBc IgM
acute infection
wat is cyrptococcus classified as
yeast
encapsulated
what indicates chronic hep B infection
+IgG with - IgM in the presence of HBsAg
HIV was cured once how
bone marrow transplant from a person with CCR5 mutation
what is the presence of HBeAg mean
high level of infectivity
what does s. cholerastis cause
septicemia
what does anti-HBs IgG indicate
indicates past infection if there is anti-HBc IgG
or
immunization if no anti-HBc IgG
how is HIV diagnosed
antibody capture ELISA to detect antiHIV antibody detects IgG but takes time to get that in the blood so u have to wait a while before u can find out, must wait 2 too 14 weeks

western blot is used to confirm because ELISA can give false pos.

this test will not work on newborns of infected mothers

PCR to detect proviral DNA in peripheral blood cells in new borns


nucleic acids test can be used to find disease 12 days after exposure
nucleic acid based assays and polymerase chain reactinos or branched chain DNA assays are used to do what?
quantitate viral DNA genome to deteremine viral load in a person with known hep B this will guide choice to undergo therapy or not.
what class are the pseudomonas
gram neg rods
obligate aerobes
motile with flagella
what is the immunization for hep B
active immunization with recombinatn HBsAg
passive immunization with HBIG for post exposure prophylaxis for non immune or for people who immunization doesnt work
what is quantititive RT-PCR used for
used to measure viral load for treatment
how do you diagnose hep C
antibody capture ELISA/EIA to detect anti HCV
confirm with RIBA
how is salmonella transmitted
ingestional of food contaminated by animal feces

eggs
what is the therapy for HBV and HCV
inferon alpha reccommended for chronic B and C

pegylated IFN-alpha longer lasting and requires only one injection/ week instead of 3

NRTIs from chronic HBV lamivudine

ribavirin in combination with IFN alpha fro chronic HCV
transmission of HIV ?
blood, needle sharing, tattoing
blood transfusino
semen
vaginal seretions
breast milk
what are the main characteristics of HAV-HEV
majoritey of infections are asympotmatic or mild without jaundice
jaundine in only 20-50%
what are the major forms of cryptococcus
c. neoformans
c. gattii
what is the preicteric phase
3-10 days malaise and weakness, follwoed by anorexia, nausea and vomiting dull pain in right upper quadrant
what is used to preven mom child transmission
nevirapine
short term combination therapy
what is the icteric phase
1-3 wekks juandice and or dark urine dramitic increase in aminotransferases
what is the incubation otime for salmonella
12-36 hours
when are you infective with hepatitis
in incubation
precteric and first week or two of icteric phase
what is the definition of AIDS
HIV infection and less than 200 CD4 t/mm
what is the convalescent phase
malaise and weakness may persist for weeks with relapse or prolonged illness up to six months with HAV
what bacteria infect the small intestine
vibrio cholerae
e. coli ETEC
slamonella enteritidis
salmonella typhi
campylobacter
what is the major cause of mortality in acute viral hepatiitis
fulminant hepatitis rare
who are long term non progressors
HLA-b57
what types of hep C are most common in the US
1a and 1b which are the one that are least responsive to treatment best treatment is rebetron plus protease inhibitor
what are the symptoms of gastroenteritis
nausea, vomiting, FEVER, diarrhea, abdominal pain.
what is the most common killer in HIV
pneumocystis jirovici-fungal disease caused pneumonia
esophageal candidissis-generally not life threatening
Kaposi sarcoma
oral hairy leukoplakia
cytomegalovirus retinitis
mycobacterium avian complex
TB
herpies
JC polyomaviris-fatal brain disease
molluseumcontagiosum virus
B cell lymphomas
invasive cervical carcinoma
what is the virulence of cryptococcus
capsules
what are the treatments for HIV
protease inhibitors
NRTIs
Fusion inhibtors
integrase enzyzme inhibitors
CCR5 attachment inhibitors
what cell types does salmonella prefer
invades and replicates in epithelial cells

replicates in macrophages as the prefered host.

no spread into blood typically
what vaccines can be used in HIV pt
any vaccine that is inactivated
what bacteria make up the anaerobes
bacteroides
peptostreptococcus
actinomyces
veillonella
what is a related disease that comes after gasteroenteritis
reiters syndrome-autoimmune

cant see, cant pee, cant bend the knee

inflamed conjunctiva, urethritis, arthritis of large joints
what does c. gattii cause
pneumonia
meningitis
what is treatment for salmonella gastroenteritis
none in mild

ciprofloxacin in severe cases
what bacteria infect the larg eintestines
shigella dysenteriae
e. coli. EHEC
vibrio parhaemolyticus
c. diff
what is the major virulence factor in serotyping for S. typhi
k antigent -Vi
what is c. neoforumans cause
aid associated meningitis
what is the typical transmission for typhoid fever?
person to person transmission via fecal oral route
what is the population that is targeted by the pseudomonas and legonella
immunocomprimised
what is a factor that increases susceptibilty to typhoid fever?
hemolytic anemias
which cryptococci can affect normal people
c. gattii
what is the moa of typoid fever
infection begins in intestines with no diarrhea, replicates in macrophages then invades into the blood stream and colonizes spleen and bone marrow
what is the class of helicobacter
gram neg, spiral rod
what are the symptoms of typhoid fever
sustained bacteremia with high fever
dissemination to kidney gall bladder peyers patches skin,

rose spots on abdomen

eventually sepsis in severe cases
how is cryptococcus transmitted
air born sexual spores'
soil
decaying trees
pigeon droppings*- neoformins
eucalyptus, douglas firs- gattii
how is typhoid fever diagnosed
culture from stool
what class are mycobacterium tuberculosis
rod shaped aerobic

ACID FAST(red on blue background)
how is typhoid fever treated
ciprofloxin
two vaccines
how is cryptococcus diagnosed
india ink
brown pigment
in culture
what are vibrio, camplylobacter, helicobacter classified as
enteric gram negative bacilli

bacilli-curved or spiral shaped
what does helicobacter cause
gastritis
what does vibro cause
cholera
caused by Vibrio cholerae
what is the incubation period of C. gattii
2-10 months
what serotype causes cholera
Oantigen - O1 or O139

non O1 is associated with mild diarrhea
wounds contaminated by fresh water often get infected by this
aeromonas hydrophila that can spread systemically
what is the moa of V. cholerae exotoxins
affects adenylate cyclase to permanently turn on this increases cAMP which leads to constant fluid secretion in the intestinal epithelial cells.
what is the disease progression for cryptococcosis
starts in lung often assymptomatic
in gattii can have necrotizing or fibrosing granulomas

CNS is the major time its symptomatic meningitis/mengioencephalitis
(confusion, headache, lethargy)

cryptococcoma lesions fatal withouth therapy

skin conditions

bone issues
what is the target area for cholera
the small intestine
what is the virulence factor of H pylori
flagella allows penetration through gastric mucus
adhesisn mediate binding to host cells
cagA protein -surface pilus needle like injects CagA protein into host cells which is lethal associated only with more virulent strains stimulates inflamation

Urease-nuutralizes gastic acid
Acid inhibitory protein
Mucinase -degrades gastric mucus
Vacuolating cytotoxin-induces vacuolation and cell death in epithelial cells stims neutrophil migration and inflamation
What are the symptoms of cholera
massive diarhea and fluid loss

NO FEVER bc NO INVASION
what is the treatment for c. gatti
fluconazole or itraconazole
what is transmission of campylobacter
fecal oral often on beef chicken and pork
what class are bacteroides
gram neg rods
what is the incubation period of campylobacter
3-5 days
what is the diagnosis
CSF
blood
Direct antigen test
indi ink stain for capsule
what is the symptoms of campylobacteria
diarrhea,
persistant high fever
colonized small intestine
what is the transmision of H pylori
human human fecal oral
what are two associated conditions that are brought on by camplyobacter infection
rieters syndrome-cant see, pee, bend knee
guillain barre syndrome-flacid paralysis
what does pneumocystis cdause
pneuocystis pnemonia
how is camplyobacter diagnosed
difficult to diagnose
isolate on special media
difficult to culture
what wound infection produces purple colonies when cultured
chromobacterium violaceum
how is camplyobacter treated
fluoroquinolones or erythromycin in severe cases
what makes pneumocystis hard to kill
no ergosterol which is the major target of antifungals
How is campylobacter prevented
proper hygine during food prep

NO VACCINES
how is h pylori diagnosed
biopsy
ureas breath and blood test
what are the two enteric gram neg rods
shagella
e-coli
how is pneuocysitis transmitted
person to person
normal flora
only comes out in immunocomprimise
what are the TSI results for psudomonas aeruginosa?
glu-neg
lac-neg
gas-neg
H2S-neg
what are some diseases caused by mycobacterium
TB and leprosy
what are the TSI results for shigella sonnei
glu - pos
lac-neg
gas-neg
H2S- neg
how is pneumocystis diagnosted
look for cysts in microscope
immunoflourence stains

PCR is main way its found

NO CULTURE possible
what are the TSI results for salmonella typhi
glu-pos
lac-neg
gas-neg
H2S-pos
what is the treatment of h pylori
proton pump inhibitor for symptoms

sequential therapy
step 1 rabeprazole +amoxicillin 5 days
step 2 rabeprazole + clarithromycin+ tinidaxole 5 days
what are the TSI results for E coli
glu-pos
lac-pos
gas-pos
H2S- neg
how is pneumocystis treated
no azoles
TMP-SMX works well even though that is an antibiotic
what are the TSI results for Proteus mirabiis
Glu-pos
lac-pos
gas-neg
H2S-pos
what wound pathogen has emerged recently in combatant from Iraq and is now found in hospital water supply causes pneumonia
acinetobacter baumannii
what is O antigen
carbohydrate LPS repeat surface of bacteria
what diseases are caused by aspergillus
allergies
mycotoxicosis
what is the H- antigen
flagella
what class is listeria
gram pos rods or coccbacilli
what is the K antigen
capsule
what is aftatoxin
liver tox, liver cancer, immune deficiences.

caused by aspergillis
what are the O, H , K antigens used for
serotyping to find out what species of bacteria is there
what class are peptostreptococcus
gram pos cocci
where does E coli come from
normal flora of the intestina
what type of fung is aspergillus
fillimentous fungi
growth as a mold
COLORLESS HYALINE and SEPTAIE
What are the two types of ways ecoli causes disease
normal flora that escapes from teh intestinal tract and colonize other body sites

exogenous strain that pick up new virulence factors and can infect the intestines
how is listeria transmitted?
food borne
what do E coli use pili for
adherence to mucosal surfaces
in disease E. coli picks up new types of pili that allow them to adhere in places they normally would and in amounts that they normal wouldnt be able to achieve which causes the disease.
what tempurature is the optimum for aspergillus
45degrees
can survive at 37
what are some virulence factors for e.coli
enterotoxins
how do u treat acinetobacter baumannii
carbapenems
Heat labile toxin is what
a cholera like toxin that activates adenylate cyclase which leads to fluid secretion only it is made by a disease causeing strain of E. Coli
what is the virulence factors of aspergillus
aflatoxin
enzymes
what is heat stable toxin
stimulates guanylate cycles to lead to fluid secretion/diarrhea. in ecoli
what are the distinctive factors of listeria
tumbling motitliy
facultative anaerobe
likes cold temps can grow in refig
what is shiga like toxin
found in e. coli enterohemorrhagic colitis
leads to bloody diarrhea
bc it actually kills cells
identical to shiga toxins
associated with hemolytic uremic syndrome
can cause renal endothelias cell death
does it by inhibiting protien synthesis

found in EHEC strains of E. coli
where is aspergillus found
molds on food, and water damage housing

dust in farms
how are e. coli classified
by their virulence factors and pathology
what species of mycobacterium cant be grown on agar
m. laprae
what is EHEC e. coli
enterohemorrhagic
aspergillus is most common in people with
neutropenia

immunocomprimised
what is ETEC e. coli
enterotoxigenic
what are the virulence factors
listeriolysin
-hemolytic toxin-beta hemolysis
ActA -polymerizes actin that push it into another cell
what is EPEC e. coli
enteropathogenic
what happens in allergic bronchopulmonayr aspergillosis
allergic reaction to aspergillus that is growin in the tracheobronchial mucosa.

asthmas symptoms lung damage
what is EIEC e. coli
enteroinvasisve
what are the environmental pathogens
pseudomonas aeruginosa
bukholderia cepacia
stenotrophomonas multophilia
acinetobacter baumannii
aeromonas hydrophila
chromobacterium violacceum
chrysabacterium meningosepticum
what is EAggEC e. coli
enteroaggregative
what is an aspergilloma
aspergillis colonates a preexisting cavity.

found on xray / CT
which type of ecoli is spread animal to human
EHEC
what is a unique transmission mode of listeria
transplacental
What additional virulence factor other than the toxi do EHEC and ETEC have
new fimbre that allow adherence in the intestinal tracts
chronic necrotizing aspergillius pneumonia does what
similar to aspergilloma except its forms the cavity can be hard to tell the diffience. more dangerous and grow faster
what is EHEC associated with
bloody diarrhea and kidney failure
HUS
what class are actinomyces
gram pos rods
what serotype is most common with EHEC
O157:H7
invasive pulmonary aspergillosis(IPA)
widspread forming necrotic lesions

fever cough chest pain

total lung destruction
what is the implications of O104:H4
aquired additional fimbre
double shiga toxin production
what is the usual symptoms of listeria
healthy adult-asymptomatic-mild flu
immunocompromised/elderly- severe invasive disease with meningitis, encephalitis, septicemia
pregnant woomen-flu like illness can lead to septic abortion, premature delivery, stillbirths
neonates- early onset tsepticemia and pneumonia
what is the incubation period of E. Coli
1-10 typically 2-5
IPA with bloodstream dissemination
it can spread to the blood and high fatality

can spread to brain, skin etc
symptoms of EHEc
watery diarrhea first
then leads to bloody diarrhea
no invasion no fever no pus
eventually kidney failure and HUS
what are characteristics of the environmental pathogens
gram neg
found only in immunocomprimised
source is usually water or dirt
often antibiotic resistant
sorbital pos is diagnositic of what
EHEC e. coli
what is the diagnostic for aspergillus
45 DEGREE angle septae

found on biopsy

can be cultured slowly
What is the treatment of EHEC
NO ANTIBIOTICS
MAKE HUS WORSE

dialysis as needed
ShigamAB mAB that inactivates shiga toxins

no vaccines
what is the pathogenesis of listeria
ingestion invasion in epithelia, replication in macrophages like salmonella.
can get into the bloodstream and spread to meninges or across the placenta
where is shigella foudn
not normal flora

only found in humans with disease
how is aspergillus treated
Voriconazole
any azole
caspofungin if immune to azole
what antigens does shigella have
O antigen
no H
no K

invasive plasmid Ag
where are mycobacteria found
transmission from the environment
grow in macrophages in host
what are the two types of shigella
S. dysenteriae- most severe

S. sonnei, S. flexneri, and S. boydii
most common in U.S.
leads to shigellosis
what is the major diffierence btw zygomycetes and aspergillus
zygomycetes are immune to azoles
90 degree SEPTAE ***
most common in uncontrolled diabetes with ketoacidosis
what is the symptoms of shigellosis
1-3 incubation
watery diarrhea
usually fever
colonization of colon and replication in epilthelial cells
how is listeria diagnosed
monocytosis in the peripheral blood and CSF
gram stain of CSF
culture of CSF or blood
what are teh symptoms of dysentery
bloody diarrhea
painful straining to pass stools
FEVER
ulceration of intestinal mucosa
zygomycetes aka
rhizopus
what is diagnosis of shigella
stool culture
what is the virulence factors for p. aeruginosa
flagella
CAPSULE-antiphagocytic
-slime layer
-mucoid capsule
secretes alot of toxins
-several antiphagocytic toxins
-some kill RBCs as well
elastase - degrades host antiproteases which leads to lung damage
treatment
ciprofloxin
timethroprim-sulfamethoxazole
dialysis
hand washing
no vaccine
what all can zygomycosis cause
rhinocerbelos-facial damage
pulmonary
cutaneous
gastrointinal

basically just degrades and breaks down the tissue really really bad
how is listeria treated
ampicillin/penicillin
TMP-SMX, erythromycin
resistant to cephalosporins
how is zygmycets treated
antifungal
-amphotericin B
aggressive surgical debridment
where are bacteroides found
normal flora
diseases caused by invasion
overgrowth or immunocompromise
vorcanazole can be used in prophalaxis for what
aspergillus

NOT zygomycetes
what are the animal to human food borne diseases
campylobacter
e.coli
salmonella
what are the characteristics of histoplasma, blastomyces, coccidiodes
soil fungi
respirtatory tract spread systemically
CAN INFECT NORMAL PEOPLE
yeast in body
mold in soil
what is diagnostic of p. aeruginosa
changes the color of the agar to blue or green
where is histo plasmosis endemic
ohio and mississippi river valley
what are the seafood derived food borne diseases
cholerae
where is blastomyces endemic
ohio, missipii, missouri and arkensas
how long does it take for m. tuberculossis to grow on agar
weeks
histoplasma capsulatum is carried by what
birds droping and bat dropings
what are the human to human transmission food bourne disease
staph aureus
e. coli
salmonella
shigella
listeria
where is coccidiodes endemic
southwestern US
CA, AZ, NM, TX
what does p. aeruginosa cause
pneumonia
wound infection
uti
dermatitis
corneal infection
endocarditis

only happens in immunocomprimised
where is paracoccidioides found
south america
what disease are caused by ingestion of preformed toxins
clostridium perfringens
staph aureus
bacillus cereus
where is penicillium marnefi found
southeast asia
where are anaerobes usually found
abscessses- main
peritonitis
wound infection
dental oral infecion
decrotizing pneumonia
pelvic inflammatory disease
bite wounds
virulence of histoplasmosis
spores
what class are the clostridiums
large gram pos rods
spore forming(heat resistant)
anaerobe
which of the histo, blasto, coccidio is not a yeast in the body
coccidio
what are the two types of pneumonia that are caused by p. aeruginosa
nosocomial pneumonia
cyctic fibrosis pneumonia
what is histoplasmosis like
tubuculosis
what is the disease caused b clostridiums
enterotoxins
what is a difference in presentation with blasto and histo
blasto tends to show skin conditions before respirtatory

more acute/purulent less granulomatous
what are the characters of nocardia
filiments long rods with branching

ACID FAST

intracellular in macrophages
what is the presentation of coccidioides
most common of the these fungals to affect normal people
asymptomatic infection
mild flue like syndrome
resembles pneumonia

very few cavaties and nodules

fever, weight loss, flu like
what is produced by clostridium perfiringens
CO2 and H2 gas
very smelly
what is the most serious complication of coccidioides
mengitis
what is the characteristics of p. aeruginosa nosocomial pneumonia
immunocomprimised
acute pneumonia
bloodstream invasino
high mortaltiy
slime capsule

usually caused by aspiration
where does coccidioidomcosis attack
1.lung
2. skin
3. meninges
what does c. perfringens cause
gas gangrene(alpha toxin creates invasion)
anaerobic celluitis(localized)

can cause enteritis if u get the type that has enterotoxins not as serious or as common
how is histo/blasto/coccido diagnosed
microscopic examination
imaging for granulomas
look for yeasts or sphericles
culture
non culture detection assay antigen detection in serum and urine

serology of IgM serotypes
what are the predisposing factors to infection
reuction in tissue Eh(oxidation reduction potential)
trauma with loss of blood supply
growth of facultatvie bacteria to use up the oxygen
disruption of epithelial barriers
comprimiesed host defense
preveious antimibrobial therapy
what is the treatments of the histos/blastos/coccidio
azoles and amphotericin B

long term therapy

voriconazole prophylaxis
what type of toxin is produced in most human strains of C. perfringens
alpha toxin
kappa toxin
theta toxin
enterotoxins
what is unique amount candida
it is the only normal flora fungi found in URT, skin , GI, Vagina.
what are the characteristics of p. aeruginosa cystic fibrosis pneumonia
defective mucocilliary clearence
chronic progressive lung destruction
no blood stream invasion bc stops toxins production and makes lots of mucus
often the cause of death in CF
what is the most important lifethreatening fungi
candida
what is alpha toxin
phospholipase C-breaks down membranes
dermonenecrotic
hemolytic-beta hemolyisis
what are the two different strains of candida
c. albicans- most common
c. glabrata- resitant to azoles and amph. B
what does nocardia cause
TB like disease
what are the factors that determine whether a fungi will be yeast or mold
tempurature in most fungi

tempurature and medium for candida
how is C. perfringens transmitted
exogenous(soil in wound)
endogenous(escape from normal flora in the intestine can be traumatic like surgury or nontraumatic-tumors)
what is a difference that aides in diagnosis of candida
they have hypae in the body most fungi do not
what is the course for for burn wound infection with p. aeruginosa
large area burns
spreads to blood stream causes septicemia

GREEN PUSS DIAGNOSTIC
what does candida cause
thrush- newborns/AIDS
tracheobronchitits-AIDS
diaper rash/face/nails- newborns/AIDS, any wet area
onychomycosis- nail infection
chronic mucocutaneous- really bad nail infection
vulvovaginitis
GI
blood sepsis-candidemia
hepatosplenic
pneumonia-abscesses
endocarditis
endophthalmitis
renal
arthritis/osetomyelitis
how is c. perfringens diagnosised
gram stain of tissue
shows gram pos rods
how is candida diagnosed
microscopic-yeast and hyphae/psuedohyphe
culture-2-7 days must distinguised from normal flora
non culture detection assay antigen
what the appropriate and inappropriate forms of diagnostic sampling
acceptable
-aspirated pus
-tissue
-bod fluids(cerebrospnial, pleural, pericadial, synovial)
-transtracheal aspirate
inappropriate-bc already anaerobes present
-throat, gingival or vaginal swabs
sputum feces, gastic contents, urine
what is the treatment for candida
azoles topically
fluconazole
amphotericin B

4-6 weeks of therapy for sever systemic infections
what is the treatment of c. perfringens
debridment of necrotic tissue
aggresive treatment with penicillins
hyperbaric oxygen
what are the characteristics of UTI psudomonas
only found in cathaters
what are the virulence factors for c diff
Toxin A and toxin B
what is the character of rhodococcus qui
short rods and cocci

ACID FAST

causes TB like disease
how does toxin A and B work in c diff
covalen glucosylatino of cellular Rho GTPase interfering with intracellular signaling triggers fluid secretion and cell death and inflammation

toxin be is 100x more cytotoxic than toxin A
where do u get aeruginosa dermatitis from
hot tubes

often diabetes
what is the NAP1 strain of c. diff
20x more toxins produced
what are properties of anerobe samples
foul smell
gas production
how is c. diff transmitted
overgrowth of normal flora due to antibiotic use

can be acquired via fecal oral route
nosocomial
who gets psudomona endocarditis
iv drug use
how is C. diff treated
c. diff is sensitive to vancomycin, metronidazole, fidazomicin

probiotics or fecal transplant to restore normal flora
treatment with flouroquinolins can cause c. diff by killing of normal flora
what are the characteristics of m. tuberuclosis
slender, straight or crved rods, filamnets

ACID fast stain
what is yellow pseuodomenbrane indiciative of.
c. dificile inflamation
how is psudomonas diagnosed
gram stain, and culture are both good
need antibiotic sensitivity testing
how is c. diff diagnosed
yellow pseudomembran
3 unformed stolls per 24 hour day
culture
antigen detection stool kit for toxin A and B and GDH
PCR if unsure
what are the gram neg rods
bacterioides
porphyromanas
prevotella
what is the treatment against psuedomonas
anti pseudomonas antibiotics
monotherapy unless really serious infection
what are the virulence factors fo m. tuberculosis
obligate aerobe
intracellular growth in macrophages
how is legionalla transmited
arersol found in most fresh water


drinking and then aspriating
no person to person
where is bateroides found
intestines
vagina
wat class is leginella
gram neg rods
what is the PPD
purified protien derivative that u develop antibodies to if u have TB
why is leginalla hard to diagnose
hard to culture need charcole
where is phorphyromonas
oral
what does legonella cause
legionnaires disease-acute pneumonia
2-10 day incubation, fever heachache chlls cough eventually respiratory failure

pontiac fever- mild respiratory disease.
what make mycobacterial acid fast
the long chain glucocarbohydrate acids
how is legonella diagnosed
urine antigen test
prevotella is found where
oral
how is legonella treated
erythromycin, azithromycin, clarithroycin(macrolides)

best is fluroquinolones

in severe cases use both
how is TB transmitted
person to person by inhalation of droplets, survives for long periods in air and surfaces
what does porphyromonas cause
p. gingivialis
periodontal disease
what are the clincal aspect of TB
primary infectino-latent asymptomacit
spreads to lymph nodes then to blood to spleen and liver still asymptomatic

immune system kicks in then granulomatous inflammations occurs everywhere TB is located in the body.
what does prevotella cause
gingivitis -main

lung abscesses, genital infections
what is reinfection TB
the causeating granulomas filled with TB burst and respread the infection
what is the major virulence factor in bacterioids fragilis
polysaccharide capsule helps with invasion
what are symptoms of TB
fever fatigue, anorexia, cough,
what does bacterioides fragilis cause
abdominal abscess
peritonitis
diarrhea
any abscess bc its the most common anaerobe
what is miliary TB
when the TB spreads everywhere brain, menegies etc.
what are some properties of bacteroides fragilis
moderate anaerobe -can stand some oxygen
intestine
diagnosis of M. tuberculosis
first check for acid fast
culture-take weeks
PPD checks immune status
quantiferon-TB dont have to come back

PCR used to confirm after acid fast test
what is the treatment for baaceroides fragilis
metronidazole
carbapenems
combo beta lactam with beta lactamase inhibitor
3rd gen cephalosporins
what is the treatment for TB
1. isoniazid, rifapmin, pyrazinamid
2. fluorquinolones, aminoglycosides

MDRstrain- resistan to at least 2 first ling

xDR strains- resistant to 2nd line
what is bacteroides fragilis resistant to
penicillin-has beta lactamase
aminoglycosides
tetracycline,
erythromycin
vancomycin
prevention of TB
isoniazid prevention prophalaxis
what class is fusobacterium
gram neg rod

fusiform
what does fusobacterium cause
acute necrotizing ulcerative gingivitis
what class is peptostreptococcus
gram pos cocci
where is peptostreptococcus found
anywhere normal flora is found
what can peptostreptococcus
decubitus skin ulcers
diabetic foot ulcers
human bite wounds
pelvic inflammatory disease
peritonitis and intra abdominal abscces
any abcess
2nd most common anaerobe
what class is actinomyces
gram postivie fiamentous branching bacilli
what can be found in actinomyces that is diagnostic
yellow sulfur granules
where is actinomyces found
mainly oral
also in intestines and vagina
what does actinomyces cause
chronic suppurative and granulomatoous infections
cervicofacial lesions
abdominal lesions
salpingitis related to intrauterine contraceptive device.
what doe human bite wounds usually have
bacteroides, fusobacterium, peptostreptococcus

eikenella, s. aureus, viridans strep
what class is eikenella corrodens
gram neg bacilli
facultative anaerobe
what can eikenella corrodens cause
endocarditis
menigitis
sinusitis
where is eikenella found
oral, upper resp.
how is eikenella corrodens treated
sensitive to most antibiotics, including penicillins.
how are bite wound generally treated
must treate anaerobes and aerobes.
what is pasteurella usually found in
animal bites
what class is pasteurella
small gram neg coccobacilli or rods
what is the major virulence factor in pasteurella
a capsule
what is the clincial manifestation of pasteurella
cellulitis
ostemyelitis
respiratory tract infetion
systemic infection
what is the diagnosis of pasteurella
clincal picture and cultures
what is the treatment and prevention for pasteurella
penicillin or other antibiotics
no vaccine
what is the key to understanding bite wound treatment
must cover aerobes and anaerobes

penicillins cover most of the aeorbes pasteurella, eukinella, but does not work for bacteroides