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256 Cards in this Set

  • Front
  • Back
The rate of an uncatalyzed reaction is _____ proportional to the concentration of the _____.
directly
substrate
When all the enzyme molecules are bound to substrate molecules, the enzyme is working at its maximum rate. Under these condtions the active sites are said to be ______.
saturated
______ are inorganic ions such as copper, zinc, and iron that bind to certain enzymes.
Cofactors
A ____ is a carbon containing molecule that is required for the actions of one or more enzymes.
coenzyme
_____ groups are distinctive, non-amino acid atoms or molecular groupings that are permanently bound to their enzymes.
prosthetic groups
The maintenance of stable internal conditions.
Homeostasis
Various ____ can bind to enzymes, slowing down the rates of the reactions they catalyze.
chemical inhibitors
In some cases, an inhibitor is similar enough to a particular enzyme's natural substrate that is can bind noncovalently to the active site, yet different enough that no chemical reaction occurs. When such a molecule is bound to the enzyme, the natural substrate cannot enter the active site and the enzyme is unable to function. Such a molecule is called a _______ bc is competes with the natural substrate for the active site.
competitive inhibitor
A ______ binds to an enzyme at a site distinct from the active site. This binding causes a change in the shape of the enzyme that alters its activity.
noncompetitive inhibitor
______ occurs when a non-substrate molecule binds or modifies a site other than the active site of an enzyme, inducing the enzyme to change its shape. The change in shape alters the chemical attraction of the active site for the substrate, and so the rate of the reaction is changed.
Allosteric regulation.
Genetic systems control the ____, _____, _____, and ___ of information
flow, exchange, storage, and use.
_____ explains both the unity and diversity of life.
Evolution
____ is based on quantifiable observations and experiments.
Science
_____ are composed of a common set of chemical components and similar structures.
Living Organisms
Living Organisms contain ___ information that uses a nearly universal code.
genetic
Living organisms ___ energy from their ____ and use it to do biological work.
extract, environment
Living organisms ____ molecules obtained from their ____ into new biological molecules.
convert, environment
Living organisms ___ their genetic information in the same manner when reproducing and share sequence similarities among a fundamental set of ____.
Replicate, genes
Introduction of ____ by photosynthetic ____ changed the Earth.
oxygen, prokaryotes
3 domains of life:
Bacteria, Archaea, Eukarya
_____ experiments manipulate the _____ that is predicted to cause differences between groups.
Controlled, variable
_____ variable, the variable being manipulated.
____ variable, the response that is meansured
Independent
Dependent
____ is a pure substance that contains only one kind of atom.
Element
____----atoms with at least 2 electron shells, form stable molecules so they have eight electrons in their outermost shells.
Octet rule
Living organisms are mostly composed of 6 elements:
carbon
nitrogen
oxygen
phosphorous
sulfur
hydrogen
_____ energy: the energy of state or position, or stored energy.
Examples: chemical bonds, concentration gradients, electrical charge imbalance.
Potential
____ energy, the energy of movement( the type of energy that does work) that makes things change.
examples: membrane transport, chemical reactions, mechanical motion
Kinetic
_____: the level of usable energy decreases with each energy transformation.
Entropy
____: the sum total of all chemical reactions occurring in a biological system at a given time.
Metabolism
______ reactions join simple molecules to form complex ones.
They require energy ____. Energy is captured in the chemical bonds that form.
Anabolic
inputs
_____ reactions break down complex molecules into simpler ones. Energy ____ in the chemical bonds is ____.
Catabolic
stored
released
Anabolic reactions ____ energy.
require
Catabolic reactions ____ energy.
release
_____ reactions ( negative G) release free energy.
Exergonic
_____ reactions (positive G) uses the free energy to form new chemical bonds.
Endergonic
Chemical bonds are a method of _____ and ______.
energy transfer
storage.
Chemical bonds result in the precise arrangement of ____.
matter
Chemical bonds are influenced by ______ of member atoms.
electronegativity
_____ forms as a result of an attraction between a hydrogen atom that is covalently bound to an electronegative atom, and another strongly electronegative atom.
Hydrogen bond
_____ is the attractive force that an atomic nucleus exerts on electrons.
Electronegativity
If the valence shell is almost full then the electronegativity is ____.
great
______ an attractive force between a H atom that is bonded to either O,N, or F and another electronegative atom, such as O,N, or F.
Hydrogen bond
Non-polar covalent.
Difference <__
.5
Polar covalent difference:
.5< Difference< 1.8
Ionic difference:
Difference> 1.8
____ and ___ compounds will interact with water.
Polar, Ionic
Unequally shared electrons:
polar
Equally shared electrons:
non-polar
___ molecules are attracted to water.
Polar
_____ molecules are more attracted to one another than to water.
Nonpolar
If the valence shell is almost full then the electronegativity is ____.
great
______ an attractive force between a H atom that is bonded to either O,N, or F and another electronegative atom, such as O,N, or F.
Hydrogen bond
Non-polar covalent.
Difference <__
.5
Polar covalent difference:
.5< Difference< 1.8
Ionic difference:
Difference> 1.8
____ and ___ compounds will interact with water.
Polar, Ionic
Unequally shared electrons:
polar
Equally shared electrons:
non-polar
___ molecules are attracted to water.
Polar
_____ molecules are more attracted to one another than to water.
Nonpolar
Ionic compounds dissolve in ___.
water
Covalent bonds are precise and uniform: _____-length, angle, and direction of bonds between any 2 elements are always the same.
Example: Methane always forms a tetrahedron
Orientation
Covalent bonds have structural and energy storage function: ______-covalent bonds are very strong; it takes a lot of energy to make them break and to make them.
Strength and stability
_____ small groups of atoms with specific chemical properties. They confer these properties to larger molecules. One biological molecule may contain many of these.
Functional groups
_____ are generally formed by the condensation reaction between monomers and are broken down by hydrolysis.
Macromolecules
____ function as structural, energy storage, and cell to cell communication molecules.
Carbohydrates
___ are a very diverse class of molecules that have a diverse suite of functions, including energy storage, plasma membrane structure and cell to cell communication
Lipids
_____ are ____ made by covalent bonding of smaller molecules called ______.
Macromolecules
polymers
monomers
_____ : the removal of water links monomers together.
Condensation
____addition of water breaks a polymer into monomers.
Hydrolysis
Energy storage in CHOs:
monosaccharides: ____ and ____
glucose
fructose
Energy storage in CHOs:
disaccharides: ____ and ____
sucrose
maltose
Energy storage in CHOs:
polysaccharides: ____ and ____
starch
glycogen
Structural molecules in CHOs: polysaccharides: ____ and ____
cellulose
chitin
Basic structure of CHOs a result of 3 factors:
1) number of carbon atoms
2) location of the functional groups attached to each carbon.
3) orientation of functional groups around the carbons
_____ are simple sugar molecules with up to 7 carbon atoms.
Monosaccharides
_____ 5-carbon sugars.
Pentoses
_____ form as a result of a glycosidic linkage between 2 monosaccharides.
Disaccharides
______ form as a result of glycosidic linkages of glucose.
Polysaccharides
Hydrogen bonds between cellulose molecules confer remarkable _______.
structural stability
Lipids:
____ store a lot of energy in C-H bonds
Triglycerides: fats and oils
Lipids:
structural role in cell membranes:____ and _____.
Phospholipids and cholesterol
____ bonds hold more energy than do ___ bonds.
C-H, C-O
Basic structure of Triglycerides:
3 fatty acids
one glycerol
____ differ in their length and number of C=C double bonds or saturation.
Fatty acids
Fatty acid Tails are variable in shape as well as a result of degree of _____.
saturation
Saturated fats are ____.
BAD
Unsaturated fats are ____.
GOOD
Hydrogenated Fats are ___.
BAD
Trans fats are ____.
REALLY BAD
Phospholipids consist of :
2 fatty acids and a phosphate compound bound to a glycerol
Phospholipids are ____; they have a hydrophilic end and a hydrophobic tail.
amphipathic
In aqueous environments, phospholipids form a _____.
bilayer
____ are polymers specialized for storage, transmission, and use of genetic information.
Nucleic acids
DNA is a sequence of paired _____.
nucleotides.
DNA has 2 functions:
DNA replication and RNA synthesis
RNA is a sequence of _____
nucleotides
Nucleotides are composed of 3 components:
1) a nitrogen-containing base(either a pyrimidine or a purine)
2) a pentose sugar (ribose or deoxyribose)
3) a phosphate group
Nucleosides contain:
Pentose sugar and a Nitrogen containing base, but no phosphate group
Nucleotides bond in condensation reactions to form ______ linkages.
phosphodiester
There is no ____ in RNA
Thymine
In DNA, the bases are attached to a deoxyribose ____.
sugar
DNA is ____ stranded and a bidirectional molecule.
double stranded
_____ have about 20 nucleotides.
Oligonucleotides
RNA is ____ stranded.
single
RNA sequence dictated by some region in the ___
DNA
3 dimensional structure as a result of hydrogen bonds between RNA ______.
Nucleotides
____ are polymers of amino acids whose sequence is directed by coding DNA.
Proteins
The ____ structure of a protein determines the higher order structure and function of the protein.
primary
Protein structure and function are sensitive to _____, _____, and_____.
temperature, changes in pH, and concetrations of polar and nonpolar substances
DNA nucleotide sequences code for the sequences of amino acids that make up _____.
proteins
___ percent of genes do NOT code for metabolism
75%
____ make up proteins.
Amino acids
____ make up DNA and RNA.
Nucleotides
_____ formed by hydrogen bonds between carboxyl and amino groups.
Secondary structure
____ formed by interactions between side chains of amino acids.
Tertiary structure.
____ structure: multiple subunits make a functional protein.
Quaternary structure
Covalent peptide bonds between amino acids are relatively ____ in physiological systems, but can be easily broken down by a protein.
stable
Protein tertiary structure is maintained by weak molecular interactions that can be denatured by:
temperature
Changes in pH or high H+
high concentrations of polar/nonpolar substances
___ are proteins that catalyze specific biochemical reactions.
Enzymes
Enzyme structure is directly related to its ____.
function
Enzyme reaction rate is dependent on the ____ of enzyme and substrate.
concentration
Enzyme function can be regulated by _____ and ____ changes.
Inhibitors and allosteric changes
____ remains unchanged as a result of reaction.
Enzyme
_____ are inorganic ions that bind to enzymes and intiate transition state molecule
Cofactors
____ adds or removes chemical groups from enzymes.
Coenzymes
____ groups: covalently bound non-amino acid components of enzymes.
Prosthetic
A _____ competes with natural substrate for active sites.
competitive inhibitor
A _____ binds at a site distinct from the active site.
noncompetitive inhibitor
____ regulation deactivates or activates enzymes.
Allosteric
____ enzyme covalently binds phosphate to ser, thr, and tyr
Kinase
_____ enzyme removes phosphate group.
Phosphatase
The critical step in the evolution of life was the appearance of ______-molecules that could reproduce themselves and also serve as templates for the synthesis of large molecules with complex but stable shapes.
Nucleic acids
The next step in the origin of life was the enclosure of complex proteins and other biological molecules by ____ that contained them in a compact internal environment separate from the surrounding external environment.
membranes
The first unicellular organisms were ______.
prokaryotes
_____ metabolism is more efficient than ______ metabolism, and it allowed organisms to grow larger.
Aerobic
Anaerobic
______ are cells with membrane-enclosed compartments within which specialized cellular functions could be performed away from the rest of the cell.
Organelles
The _____ cell is completely distinct from the cells of prokaryotes, which lack nuclei and other internal compartments.
eukaryotic
Why is the maximum reaction rate lowered in the presence of a non-competitive inhibitor?
The non-competitive inhibitor binds at the enzyme (at a site distinct from the active site) and causes a change in the structure of the active site. The reduces the overall number of active sites and results in a lowered reaction rate.
Organisms in the domains _____ and _____ are single celled prokaryotes.
Archaea
Bacteria
The sum total of all the information encoded by an organism's genes
genome
Nucleic acid molecules contain long sequences of four subunits called ______.
nucleotides
The sequence of nucleotides in DNA allows an organism to make ____.
proteins
During an exergonic reaction, the energy content of the reactants is ____ than the energy of the products.
higher
During an endergonic reaction, the energy content of the reactants is ____ than the energy content of the products.
lower
An example of an exergonic and endergonic reaction:
Exergonic: burning coal
Endergonic: photosynthesis
The union of ____ and ____ groups bonds amino acids.
Carboxyl and Amino groups
The union of _____ and ______ groups bond monosaccharides.
Hydroxyl and hydroxyl
The union of _____ and _____ bond glycerol and fatty acids.
Carboxyl and hydroxyl groups
Describe covalent bonding:
Sharing of electrons between atoms. Tend to be stronger bond and do not dissolve in water.
Describe ionic bonding:
Atoms lose or gain an electron and are attracted to the ion of opposite charge. Weaker than covalent bonds and dissolve in polar substances like water.
What is the most abundant organic compound on earth?
wood or cellulose
Silk, hair , and horn are ____ proteins.
Structural
Actin and myosin are _____ proteins.
Contractile
Ovalbumin and casein are ______ proteins.
Storage
Antibodies are ______ proteins.
Defensive
Hemoglobin is a _____ protein.
Transport
Coordination of activities is controlled by ____ proteins.
Hormonal
______ proteins are located in cell membranes.
Receptor
Chemical catalysts are a function of _____ proteins.
Enzyme proteins
List 6 specific properties of life:
1)Order
2)Reproduction
3)Growth and development
4)Energy Utilization
5)Response to the Environment
6)Homeostasis
7)Evolutionary Adaptation
List and give an example of the four principle types of biological molecules
Carbohydrates: mono di, poly saccharides

Lipids: oils, fats, waxes, phospholipids, steroids

Proteins: structural, contractile, storage, defensive, transport, hormonal, receptor, enzymes,

Nucleic Acids: DNA, RNA
What are the 4 principle types of biological molecules?
Lipids
Proteins
Carbohydrates
Nucleic Acids
Molecules move from areas of ____ concentration to areas of _____ concentration.
HIGH
LOW
Amino acids are the building blocks for _____.
Proteins
Which proteins are found in the plasma membrane?
Transport and Receptor proteins
_____ is a polysaccharide found in fungi and insects.
Chitin
Movement of molecules against a concentration gradient is _____.
active transport
____ and ____ are examples of eukaryotes.
Protists and plants
Prokaryotic cells do not have a ______,
membrane bound nucleus
RNA is a polymer of _____.
nucleotides
DNA is made up of 2 strands of linked sequences of _____.
Nucleotides
A ____ consists of a specific sequence of nucleotides.
gene
Species belonging to the third domain, ____, have _____ cells whose mitochondria and chloroplasts originated from endosymbioses of bacteria.
Eurkayka, Eukaryotic
"living inside another"
endosymbiosis
____ is a group of species that share a recent common ancester.
Genus
Individual cells also regulated their internal environment through the actions of a _____.
plasma membrane
A group of individuals in the same species that interact with one another is a _____.
population
Viruses can ____.
mutate
If samples were brought back from a distant planet, what would be the first evidence of life, assuming its evolution followed the same path as Earth's?
presence of nucleic acids
Oceans were a good environment for early organisms because they_____.
shielded organisms from ultraviolet light.
The organisms that produced the oxygen gas in Earth's atmosphere paved the way for the type of metabolism used by larger organisms, called _______ metabolism.
aerobic
Relationships between living organisms can best be gleaned by comparing their ____
genomes
All cells in a multicellular organism contain the same ____.
genome
Prokaryotes are surrounded by a ____.
plasma membrane
An __ is an electrically charged particle that forms when an atom gains or loses one or more electrons.
ion
Ionic bonds result in stable molecules that are often referred to as ____.
Salts
Water molecules are oriented with their negative poles nearest to the ____ and their positive poles nearest to the _____.
cations
anions
Carbon can form __ covalent bonds
4
The orientations of _____ in space give molecules 3-dimensional geometry, and the shapes of molecules contribute to their biological functions.
covalent bonds
A _____ bond involves the sharing of 4 electrons. (Two pairs;C=C)
double
If atoms are close to each other in electronegativity, they will share electrons ____ in what is called a _____ bond.
Equally
Nonpolar covalent
The _____ of a nucleus depends on how many positive charges it has(nuclei with more protons are more positive and thus more attractive to electrons) and on the distance between electrons in the bond and the nucleus.
Electronegativity
Hydrogen bonding between water molecules contributes to 2 properties of water of great significance for living systems:
heat capacity and cohesion
Multiple hydrogen bonds contribute to the _____ of water.
high heat capacity
Hydrogen bonding gives water a high ____.
high heat of vaporization
____ is defined as the capacity of water molecules to resist coming apart from one another when placed under tension.
Cohesion
Molecules containing only hydrogen and carbon atoms-called hydrocarbon molecules-are ____.
Nonpolar
Typically, a difference in electronegativity greater than .5 will result in _____.
polarity
In a single molecule of water, the two hydrogen atoms are bonded to a single oxygen atom by
____
polar covalent bonds
_____ are formed from different combinations of 20 amino acids, all of which share similar chemical similarities
Proteins.
____ can be giant molecules and are formed by linking together chemically similar sugar monomers to form polysaccharides.
Carbohydrates
_____are formed from four kinds of nucleotide monomers linked together in long chains.
Nucleic acids
_____ form large structures from a limited set of smaller molecules, but in this case noncovalent forces maintain the interactions between the lipid monomers.
Lipids
____ are simple sugars.
monosaccharides
is a type of covalent bond that joins a carbohydrate (sugar) molecule to another group, which may or may not be another carbohydrate.
glycosidic bond
The disaccharides, oligosaccharides, and polysaccharides are all constructed from _____ that are covalently bonded by condensation reactions that form glycosidic linkages.
monosaccharides
______ are often covalently bonded to proteins and lipids on the outer surfaces of cells, where they serve as recognition signals.
Oligosaccharides
___ is the principle energy storage compound of plants.
Starch
____ is a water-insoluble, highly branched polymer of glucose that is the major energy storage molecule in mammals.
Glycogen
Branching limits the number of hydrogen bonds that can form in ___ molecules, making ____ less compact than cellulose
starch
starch
____ play important structural roles in cell membranes and on body surfaces, largely bc their nonpolar nature makes them essentially insoluble in water.
Lipids
Fat in animal bodies serves as thermal insulation. This is a function of _____.
lipids
Lipids are _____ molecules
hydrophobic
The most common units of lipids are _____.
triglycerides
The long hydrocarbon chain in a fatty acid is very ____ bc of its abundant C-H and C-C bonds.
hydrophobic
Sysnthesis of a triglyceride involves 3 _______.
condensation reactions.
In an ______ acid, the hydrocarbon chain contains 1 or more double bonds.
unsaturated fatty acid
In a _____ acid, all the bonds between the carbon atoms in the hydrocarbon chain are single.
saturated fatty acid
The triglycerides of plants, such as corn oil, tend to have ___ or unsaturated fatty acids. BC of their kinks, these fatty acids pack together poorly, have a low melting point, and are usually liquid at room temperature.
short
The triglycerides of animal fats tend to have many ____ saturated fatty acids, which pack tightly together.
long-chain
____ fatty acid molecules are relatively straight and rigid and they pack together tightly.
Saturated fatty acid
A fatty acid is a molecule with a _____ end and a long ______ tail.
hydrophilic end
hydrophobic tail
In triglycerides, a glycerol molecule is bonded to three fatty acid chains and the resulting molecule if entirely _____.
hydrophobic
In _____, a phosphate containing compound relplaces one of the fatty acids, giving these molecules amphiphatic properties.
phospholipids
2nd law of thermodynamics:
Disorder tends to increase. When energy is converted from one form to another, some of that energy becomes unavaliable for doing work.
Chemical changes, physical changes, and biological processes all tend to increase ____.
entropy
Six membered single ring structure is called a ____.
pyrimidine
A fused double-ring structure is called a ___.
purine
Nucleotides make up ____.
nucleic acids
Many single stranded ___ molecules fold up into three dimensional structures, bc of hydrogen bonding between ribonucleotides in separate portions of the molecules. This results in 3d surface for the bonding and recognition of other molecules. This folding occurs by complementary base pairing and the structure is thus determined by the particular oder of bases in the___ molecule.
RNA
Some DNA can be copied into RNA in a process called ____
transcription
The nucleotide sequence in the RNA can then be used to specify a sequence of amino acids in a polypeptide chain. This process is called ____.
translation
____ proteins such as antibodies recognize and respond to substances or particles that invade the organism from the environment.
Defensive proteins
___proteins such as insulin control physiological processes.
Hormonal and regulatory proteins
___proteins store chemical building blocks---amino acids---for later use.
storage proteins
____proteins such as collagen provide physical stability and movement.
Structurual
____proteins such as hemoglobin carry substances within the organism.
Transport proteins
____proteins regulate when, how, and to what extenet a gene is expressed.
Genetic regulatory
Amino acids are bonded to one another by _____ linkages.
peptide
Amino acids are the building blocks of ____.
proteins
2 types of secondary structure:
1) the alpha helix-is a right handed coil that turns in the same direction as a wood screw. The coiling results from hydrogen bonds that form between the N-H group on one amino acid and the C=O group within the same turn of the helix.
2) the beta pleated sheet-is formed from two or more polypeptide chains that are extended and aligned. The sheet is stabilized by hydrogen bonds between the N-H groups and the C=O groups on the two chains.
It is the interactions between the amino acid side chains that determine _____ structure.
Tertiary
_____ are substances that speed up reactions without themselves being permanently altered.
catalysts
Most biological catalysts are proteins called _____.
enzymes
an input of energy that intiates a reaction puts a molecule into a reactive mode know as the ____.
transition state
The energy input required to reach the transition state is called _____.
the activation energy
An enzyme ____ the activation energy for the reaction, it offers the reactants an easier path so they can come together and react more easily.
enzyme
Most biological catalysts are highly ____.
specific
In an enzyme catalyzed reaction, the reactants are called ____.
substrates
Substrate molecules bind to a particular site on the the enzyme, called the _____, where catalysis takes place.
active site
The binding of a substrate to the active site of an enzyme produces an _______, that is held together by one or more means such as hydrogen bonding, electrical attraction, or temporary covalent bonding.
enzyme-substrate complex (ES)
______ strain: once the substrate has bound to the active site, the enzyme causes bonds in the substrate to stretch, putting it in an unstable transition state.
Inducing strain
_____ orientation, when free in solution, substrates are moving from place to place randomly while at the same time vibrating, rotating, and tumbling.
Substate orientation
During the formation of a _____, new nucleotides are added to an existing chain one at a time. The pentose sugar and phosphate provide the hydroxyl functional groups for the linkage of one nucleotide to the next.
nucleic acid
The connection in a nucleic acid strand, formed by linking two nucleotides.
Phosphodiester linkage