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35 Cards in this Set

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Elements-Substances that cannot be broken down into other substances
Atom-smallest portion of an element
Protons-positively charged particles; located in nucleus (center) of the atom
Neutrons-uncharged particles; located in the nucleus of the atom
Electrons-negatively charged particles; located in energy levels outside nucleus
AtomicNumber-# of protons in nucleus
In a neutral atom the # of electrons equal the # of protons
Energylevels-
1st (closest) can hold 2 electrons
2nd can hold 8 electrons
3rd can hold 8 electrons
Atoms prefer to have their outer-most energy level full
Molecule-two or more atoms covalently bonded together
Compound-two or more elemental materials united in a definite ratio
Electronegativity-an atom’s ability to attract electrons
Ion-charged atoms; have unequal numbers of electrons and protons
Isotope-atom with same number of protons but different number of neutrons
Covalent Bond-2 or more atoms share pairs of electrons to form molecules
Ionic Bond-attraction between oppositely charged ions
Hydrogen Bond-forms when partial positive regions of one polar molecule are attracted to the partial negative regions of another polar molecule
Polar Covalent Bond-atoms share electrons unequally
Polarity-partial charges on molecules due to unequal sharing of electrons
polarity and hydrogen bonding:
give water special properties (characteristics)
•make water a unique liquid important to living organisms
acid- substance that causes increase of H+ ions in a solution
Organic Molecules:
-Contain carbon and hydrogen
-Carbon provides backbone or skeleton of molecule; gives the molecule its shape which ultimately gives it its properties
Functional Group
-Group that attaches to one of more of the carbons [replaces H] and changes the molecule’s chemical properties.
-When one or more functional groups are attached to the carbon skeleton, the nature and shape of the functional group determines most of the chemical behavior of the molecule
-Generally know as the active site of the molecule
Four Types of Macromolecules:
-Carbohydrates
-Lipids
-Proteins
-Nucleic Acids
Monosaccharides -the monomers of the carbohydrages; (i.e.) glucose, fructose, ribulose
Disaccharides -two monosaccharides bonded together; (i.e.) sucrose [glucose + fructose](carbs)
Polysaccharides -many monosaccharide monomers bonded end to end; (i.e.) starch, glycogen, cellulose, chitin(carbs)
roles of carbohydrates-
Energy, Storage, Structure, Protection
Lipid Types:
•Fats -saturated and unsaturated
•Oils
•Waxes
•Stertoids -(i.e.) Cholesterol
•Phospholipids
Role of lipids:
Energy, Long-term storage, Cell membrane structure, Protection, Insulation, Cushioning
Protein Levels of Structure:
•Primary structure
•Secondary structure
•Tertiary Structure
•Quaternary structure
amino acids- monomers of proteins
Primary Structure of a protein (polypeptide) ---Many amino acids linked together by peptide bonds
Secondary Structure of a protein ---Helix or Pleated Sheet
Tertiary Structure of a protein---Interactions of amino acid side chains
quaternary structure is like a heart like shape. tubes intertwining with each other.(collagen, hemoglobin)
roles of proteins:
Support and structure, Storage, Transport of substances, Signaling from one part of organism to another, Defense against foreign substances, Regulation of metabolism, Protection, Energy
Parts of a Nucleotide
•Nitrogen Base -a Pryrimidine or a Purine
•5 Carbon Sugar -Ribose or Deoxyribose
•Phosphate Group
nitrogen bases:
-purines:
adenine, guanine
-pyrimidines:
cytosine, thymine(dna only), uracil(rna only)

The 5-Carbon Sugar
•Ribose (RNA)
•Deoxyribose (DNA)
roles of nucleic acids-
-Store and transmit hereditary information
-Regulates cell activity.
glucose- is sugar tha comes from starch. monossacharide, principal circulating sugar in blood, major source of energy for the body. found in animal and plant cells.
starch- a storage molecule in plans, a polymer, made of glucose molecules joined together by 1-4 linkages that give starch a helical shape.
cellulose- the major component of a plant cell walls, is the most absorbant organic compound on earth.
dioxyribonucleic acid- DNA. a long linear polymer found in the nucleus of a cell and formed from nucleotides and shaped like double helix.
ribose- a pentose sugar occurring as a component of riboflavin, nucleotides, and nucleic acids, rna
deoxyribose- sugar found in the side chains of DNA.
ribonucleic acid- RNA , determinant of protein synthesis and transmission of general material.
disaccharide- 2monosaccharides bonded together( sucrose, glucose, fructose)
polusaccharides- many monosaccharides monomers bonded together end to end. starch, glycogen, cellulose and chitin.
glycogen- highly branched polymer of glucose, as their energy storage form.
concentration gradient- high concentration to low
diffusion- movement of molecules from an area of high concentration of those molecules to an area of lower concentration of those molecules.
flaccid- soft and limp

turgid- inflated and overblown
pinocytosis- cell drinking, the cell takes in liquid

phagocytosis- cell eating. cell takes in food.
osmosis- diffussion of molecules through a semipermeable membrane from a place of higher concentration to a place of lower concentration, concentrations of both sides is equal.
2 types of cells:
Prokaryotic:
•Smaller in size -(~1-25m)
•More primitive
•Contains no true nucleus -has nuclear area (nucleoid)
•Contains no membrane-bound organelles

Eukaryotic:
•Larger in size -(~30-500m)
•More advanced
•Contains true nucleus
•Contains membrane-bound organelles
The Plasma (Cell) Membrane
•All cells are surrounded by a plasma (cell) membrane.
•The major molecules that make up the membrane are phospholipids forming a bilayer (2-layer) structure with their hydrophobic (water repelling) tails pointed toward the inside of the layer.
•Other types of molecules are typically embedded within this membrane.
The Nucleus (or Nucleoid)
•All cells store chromatin(DNA) in a nucleus [eukaryotic only] or nuclear area [prokaryotic].
•In addition to the plasma membrane and nucleus, all cells are filled with a fluid-based matrix called the cytoplasm.
A Typical Animal Cell
•Note the absence of a cell wall and chloroplasts.
•Even though cilia are absent in this diagram, they may be present on some animal cells.
A Typical Plant Cell
•Note the absence of flagella and cilia (although present in some plant sperm cells).
•Even though lysosomes are absent in this diagram, they may be present in some plant cells.
Nucleus
- Large Oval body near the centre of the cell.
- The control centre for all activity.
- Surrounded by a nuclear membrane.
Nucleoplasm
- is the protoplasm in the nucleus.
- contains genetic material ---> CHROMOSOMES (DNA)
Nucleolus
- is found in the nucleus.
- contains more genetic information (RNA)
-responsible for rna synthesis
Cell Membrane
- the outer boundary of the cell.
- it separates the cell from other cells.
- it is porous ---> allows molecules to pass through.
Cell Wall ( Plant Cells Only )
- non living structure that surrounds the plant cell.
- protects + supports the cell.
- made up of a tough fibre called cellulose.
CytoPlasm
- cell material outside the nucleus but within the cell membrane.
- clear thick fluid.
- contains structures called organelles.
Vacuoles
- are clear fluid sacs that act as storage areas for food, minerals, and waste.
- in plant cell the vacuoles are large and mostly filled with water. This gives the plant support.
- in animal cells the vacuoles are much smaller.
Mitochondria
- power house of the cell.
- centre of respiration of the cell.
- they release energy for cell functions.
ChloroPlasts ( Plant cells only )
- contains a green pigment known as chlorophyll which is important for photosynthesis.
Ribosomes
- tiny spherical bodies that help make proteins.
- found in the cyto plasm or attached to the endo plasmic reticulum.
EndoPlasmic Reticulum ( ER )
- systems of membranes throughout the cytoplasm.
- it connects the nuclear membrane to the cell membrane.
- passageway for material moving though the cell.
-smooth- responsible for carbohydrate and lipid synthesis in cells.
-rough- contains ribosomes and responsible for protein synthesis.
Golgi Bodies(apparatus)
- tube like structures that have tiny sacs at their ends.
- they help package and send protein molecules around cells when needed.
Lysosomes
- " suicide sacs "
- small structures that contain enzymes which are used in digestion.
- if a lysosome were to burst it could destroy the cell.
flagella-A long, threadlike appendage, especially a whiplike extension of certain cells or unicellular organisms that functions as an organ of locomotion.
microtubules- tube shaped protein structures that help eukaryotic cells maintain their shape and assist in forming the cell spindle during cell division. microtubules and actin filaments are the main components of the cell's supporting matrix or cytoskeleton.
bonding site-
hydropholic-
hydrophobic-
monomer-A molecule that can combine with others to form a polymer.

polymer-a compound formed from two or more polymeric compounds
hypertonic-Having the higher osmotic pressure of two solutions.
exocytosis-the transport of material out of a cell by means of a sac or vesicle that first engulfs the material and then is extruded through an opening in the cell membrane
plasmolyzed- the pulling away of the plasma membrane from the cell wall as water leaves the cell shrivels.
isotonic solution-
a solution that has the same concentration of solutes than another solution to which it’s compared
facilitated diffusion- involves the diffusion of polar molecules and ions across a membrane with the aid of transport proteins, either channel proteins or carrier proteins.
•Fermentation–type of anaerobic respiration in which some cells partially break down fuel
active transport-uses energy to move solutes against their gradients.
eukaryotic cells --plants, animals, fungi, algae, protozoa.
•Anaerobe–organism which can respire anaerobically
•Obligatory anaerobe–organism which can only respire in the absence of oxygen
•Facultative anaerobe–organism which can respire anaerobically if no oxygen is present; but will respire aerobically if oxygen is available
•In aerobic cellular respiration,glucose is broken down completely and releases more energy (up to 38 ATP’s).
•In anaerobic cellular respiration, glucose is not completely broken down. Notice in the previous slide that ethyl alcohol and lactate represent only partially broken down molecules of glucose. Since glucose is not completely broken down, the total energy that is stored in glucose is not released. Cells receive less energy from anaerobic respiration (2 ATP’s).
-Metabolism-the sum total of all chemical reactions that occur in a cell
•Anabolism-all cellular reactions that build complicated molecule from smaller, simple molecules
•Catabolism-all cellular reactions that break down molecules complex molecules into smaller, simpler molecules
•Catalyst-a chemical substance that increases the rate of a reaction without being changed, used up, or becoming part of the product
•Enzyme-an organic, cellular catalyst
•Substrate -the reactant that the enzyme acts upon; will eventually become the product
•Active site-the part of the enzyme to which the substrate temporarily binds
•Cellular Respiration –the step by step (catabolic pathway) process in which cells burn fuel to release energy
•Aerobic-requires oxygen to proceed
•Anaerobic–does not require oxygen
Four major sub-pathways of aerobic respiration:
•Glycolysis
•Transition Reaction
•Krebs Cycle
•Electron Transport Chain
Aerobic Respiration vs. Combustion
Since glucose is going to be ―burned‖ in the cell to release its stored energy, it is very similar to burning fuel outside the cell (combustion).

Similarities:
both processes convert stored energy in fuel to another type of energy
both processes require input of energy to begin; combustion requires lighting the match and respiration requires input of 2 ATP’s
Differences:
Combustionconverts its energy in the form of heat and light; respirationconverts its energy into ATP’s (can be used in cells)
Combustion occurs all in one step, releasing all its energy at once; respiration occurs in a series of steps; releasing a little energy step-by-step