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59 Cards in this Set

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Firmichutes
Bacteria Kingdom

Basics:
"low-GC Gram Positives" because cell walls react positively to Gram Stain.... Low % of guanine and cytosine in their DNA.... Over 1100 species

Morphological Diversity:
Rod shaped or Spherical
Spherical species - form chains or tetrads (groups of 4 cells)
Few species for resting stage - spore
One subgroup lacks cell walls; another makes one made of cellulose

Metabolic Diversity:
fix nitrogen,
non-oxygenic photosynthesis, make ATP via fermentation pathways,
cellular respiration using hydrogen gas as an electron donor

Impacts:
extremely common in human gut,
cause anthrax, botulism, tetanus, walking pneumonia, boils, gangrene, and strep throat
Important component of soil- speeds decomposition
ferment milk into yogurt/cheese
Spirochetes
Bacteria Kingdom

Basics:
only 62 species to date
branched near the base of the bacterial tree

Morphological Diversity:
Unique corkscrew shape and flagella (contained within outer sheath which surrounds the cell)

Metabolic Diversity:
most manufacture ATP by fermentation,
substrate varies; may consist of sugars, amino acids, starch or pectin

Impacts:
causes STD syphilis
causes lime disease
common in freshwater and marine habitats
can live under only anaerobic conditions
Cyanobacteria
Bacteria Kingdom

Basics:
"blue-green algae" (not an algae)
~ 80 species; however one of the most abundant organisms on earth, dominate the surface waters of marine and freshwater environments

Morphological Diversity:
can be found as independent cells, in filamentous chains, or in colonies (which vary from flat sheet shape to ball-like clusters)

Metabolic Diversity:
ALL perform oxygenic photosynthesis, many also fix nitrogen. can synthesize virtually any molecule needed

Impacts:
their waste can make drinking water smell bad,
some release microcystins that are toxic to plants and animals,
responsible for origin of oxygen atmosphere
some species form lichens with fungi
Chlamydiales
Bacteria Kingdom

Basics:
- only 13 species known of, may be smallest (all Gram-neg.)

Morphological Diversity:
Tiny (even for bacteria) and sphereical

Metabolic Diversity:
- parasitic and are termed Endosymbionts, derive almost all nutrients from host.

Impacts:
causes chlamydia STD, cause of blindness and UTIs.
Proteobacteria
Bacteria Kingdom

Basics:
~ 1200 species; 5 major subgroups
alpha, beta, gamma, delta and epsilon
- diverse in morphology and metabolism (dont try to distinguish too much, its a catch all category)

Morphological Diversity:
- rods, spheres, or spirals
- can form stalks, some are motile, can form colonies that can transform into fruiting bodies

Metabolic Diversity:
every way known to bacteria
- NONE that perform oxygenic photosynthesis


Impacts:
Crenarchaeota
Archaea

Basics:
37 species known to date, thousands are yet to be discovered

Morphological Diversity:
- filamentous, rod shaped, disk shaped or spheres
- one species lives in thermophilic conditions and has a tough cell wall of only glycoprotein

Metabolic Diversity:
- cellular respiration involving organic compounds, sulfur, hydrogen gas, ammonia, iron (II) ions as electron donors and oxygen, nitrate, sulfate, sulfur, CO2, or iron (III) ions as electron acceptors
- some make ATP via fermentation pathways

Impacts:
only life form present in extreme conditions
Euryarchaeota
Archaea

Basics:
~ live in all environments

Morphological Diversity:
- can be spherical, filamentous, rod shaped, disk shaped or spiral
- some species have several flagella
- some lack a cell wall, some have cell walls made of glycoproteins

Metabolic Diversity:
- some are methane producing
- can use up to 11 organic cmpnds as electron acceptors during cellular respiration producing methane
- can use molecule retinal to capture light energy and perform photosynthesis

Impacts:
produce acids that pollute streams
methanogens live in soils of swamps and guts of mammals
Diplomonadida
Protista

Basics:
~100 species to date
- live in guts of animals with no harm
- live in stagnant water habitats

Morphological Diversity:
- each cell has 2 nuclei, 8 flagella (4 for each)
- no cell wall in any
- some lack peroxisomes, lysosomes and mitochondria


Feeding and Locomotion:
some are parasitic, most ingest bacteria whole. use flagella for movement

Reprodcution:
only asexual; meiosis yet to be observed

Impacts:
causes giardiasis or "beaver fever" in humans. infests turkeys
Apicomplexa
Protista

Basics:
~5000 known species
- all parasitic
- cause malaria

Morphological Diversity:
apical complex - system of oraganelles which allows them to penetrate plasma membrane of host
- chloroplast-derived, nonphotosynthetic organelle with 4 membranes

Feeding and Locomotion:
all absorb nutrient directly from host
- no cilia/flagella but can move by amoeboid motion

Reprodcution:
sexual or asexual

Impacts:
some species infect birds, reptiles, mammals and cause malaria. involved with HIV
Dinoflagellata
Protista

Basics:
~4000 known species
- ocean-dwelling plankton
- abundant in freshwater too
- capable of bioluminescence, emit light via enzyme-catalyzed reaction

Morphological Diversity:
- most are unicellular, some live in colonies
- each species has a distinct shape
- chromosomes are attached to nuclear envelope at all times, no histones

Feeding and Locomotion:
- half are photosynthetic, other are predatory or parasitic
- 2 flagella (perpendicular to each other) and swim in a spinning motion

Reprodcution:
asexual and sexual (sexual reproduction may produce tough cysts)

Impacts:
important primary producers in marine ecosystems
some responsible for harmful algae blooms
Phaeophyta
Protista

Basics:
- "brown algae" (due to photosynthetic pigments)
- over 1500 species
- marine habitats

Morphology:
- cellulose and complex polymers in cell wall
- all multicellular, leaflike blade, a stalk (stripe), and a rootlike holdfast which attaches to substrate

Feeding and Locomotion:
photosynthetic and sessile; reproductive cells may have flagella & be motile

Reprodcution:
sexual via swimming gametes, forms zygote

Impacts:
forms forests or meadows in oceans which are important for wide variety of animals
Rhodophyta
Protista

Basics:
"red algae" (chloroplasts contain lots of phycoerythrin pigment)
~ 6000 species
- marine habitats, can live very deep

Morphology:
- walls composed of cellulose and other polymers
- some unicellular, most multicellular
- filamentous, can grow as thin, hard crust on rocks or coral
- some have leaf like structures called thalli
- some have many nuclei in cells

Feeding and Locomotion:
- majority are photosynthetic, some parasitic
- only algae without flagella

Reprodcution:
asexual by spores (mitosis)
- life cycles are variable

Impacts:
contribute to reef building and help stabilize the entire reef structure
Ulvophycae (~chlorophyta)
Protista

Basics:
- "green algae"
~ 4000 species
- unicellular to multicellular

Reprodcution:
- asexual: spores that swim with flagella
- sexual: resting stage, dormant in winter
- gametes shed into water

Life Cycle:
- many are diploid only as zygotes

Impacts:
important primary producers in freshwater and coastal ocean areas
Bryophyta
Plantae

Basics:
- mosses
- over 12,000 species
- non-vascular
- moist forests and tropics mostly, also in deserts and arctics

Adaptions to Land:
- lack of vascular tissue makes them unable to grow tall

Reproduction:
- asexual: fragmentation *(pieces broken off by wind can grow independently)
- sexual: eggs in archegonia, sperm in antheridia... sporophyte produces up to 50 million tiny spores, distributed by wind.

Life Cycle:
- sporophyte retained on much larger gameotophyte and gets its nutrition from gametophyte

Impacts:
- among most abundant plants in the world
- PEAT: large deposits of semi-decayed organic matter
Pteridophyta
Plantae

Basics:
- ferns
- 12,000 species
- seedless, vascular
- tropics

Adaptions to Land:
- only seedless, vascular with large, well-developed leaves (fronds) and allows for efficient photosynthesis

Reproduction:
- asexual: production of gemmae (no gametes or sporophytes)
- sexual: homosporous but only male or female

Life Cycle:
- sporophyte is longer lived phase of life cycle, sporangia are found in clusters called sori on underside of leaves.

Impacts:
- used as food in many parts of the world
- used for landscaping
Pinophyta
Plantae


Basics:
- pines, spruces, firs
- vascular, seed plants (non-flowering)
- reproductive cones
- among largest and most abundant trees on earth
- long lived (long lives)

Adaptions to Land:
- needle-like leaves, allows them to thrive when water is scarce
- wood as support structure

Reproduction:
- sexes are seperate
- pollen transferred to female cones by wind

Impacts:
- dominate forests
- seeds are sources of food for birds, squirrel and mice
- wood used for paper and building
Anthophyta
Plantae


Basics:
- "Angiosperms"
- vascular, seed, flowering plants
- over 250,000 species
- thrive in all environments as they are diverse in size, etc.
- most common and abundant plants in most terrestrial environments

Flowers:
- reproductive structures that hold either pollen-producing microsporangia or megasporangia that produce megaspores and eggs or both.
- color of petals helps to attract insects so they carry pollen to other plants
- some pollinate by wind

Adaptions to Land:
- flowers and vessels (cells that make water transport efficient) and tracheids


Reproduction and Life Cycle:
- carpel: structure within flower that contains and ovary.
ovule develops into a seed and matures into a fruit with contains a seed or seeds

Impacts:
- major supplier of food for all lifeforms (insects, animals, humans, etc.)
Basidiomycota
Fungi

Basics:
- "club fungi"
- most form mycelia and produce multicellular reproductive structures but some are unicellular.
- ~ 31,000 species, with more each year

Absorptive Lifestyle:
- saprophytes, important for their capability to produce lignin peroxidase and completely digest wood.
- can be phytic, parasitic or mutualistic

Life Cycle:
- asexual: production of spores is common
- asexual: growth and fragmentation of mycelia in the soil or rotting wood --> results in genetically identical but physically dependent
- sexual: produce basidia (mushrooms, brackets, earthstars or puffballs)

Impacts:
- EMF important in forestry
- mushrooms as a source of food
Ascomycota (lichen-formers)
Fungi

Basics:
- lichen formers
- half grow symbiotically with cyanobacteria or single-celled members of green algae, forming lichens.
- over 15,000 lichen to date

Absorptive Lifestyle:
- fungus in lichens protects photosynthetic bacterial or algal cells. hyphae form a protective layer.
- cyanobacteria or alga provides them with carbohydrates for energy.
- partially parasitic relationship in some lichens

Life Cycle:
- asexual: small "mini-lichen" structures called soredia. they disperse to a new location via wind or water.

Impacts:
- dominate the arctic and Antarctica tundras and are common in boreal forests.
- major food of caribou
- break off mineral particles from rock surface as they grow, aiding in soil formation.
Ascomycota (non-lichen formers)
Fungi

Basics:
- do not form lichens
- found in every terrestrial habitat as well as some freshwater and marine habitats.
- most for mycelia, some are single-celled yeasts.

Absorptive Lifestyle:
- few form mutalistic EMF associations with tree roots
- most common endophytic fungi
- parasitic forms are common too
- ~ 65 predatory species, towards amoebae and unicellular protists.

Life Cycle:
- ascocarp: aboveground, ascus-bearing reproductive structure with a cup/saucer shape

Impacts:
- clean up contaminated sites
- antibiotics and flavors of soda or candy
- yeast used in brewing, baking and wine-making
- infections in humans and other animals
Ctenophora
Animalia

Basics:
- "comb jellies"
- transparent, ciliated, gelatinous diploblasts
- live in marine habitats
~100 species

Feeding:
- they are predators
- some have tentacles covered with cells that release adhesive to grab prey where they are ingested through the mouth
- some prey are stuck to mucous on the body where cilia move the prey towards the mouth
- some ingest large prey whole

Movement:
- adults move by the beating of cilia
- they are the largest animal know to use cilia as means of movement

Reproduction:
- most species self-fertilize routinely by having both male and female organs.
- larvae are free swimming
Porifera
Animalia

Basics:
- sponges
- ~7000 species
- most are marine, few freshwater
- all are benthic (live on the bottom)
- common in rocky shallow habitats

Body:
- made around a system of tubes and spores that create channels for water currents
- specialized cell types
- some have well-organized epithelial tissue layers lining inside and outside of body
- collagen fibers are augmented by spicules (stiff spikes of silica or CaCO3) to provide structural support.

Feeding:
- most are "suspension feeders" cells beat together to send water through them where they collect nutrients and food such as organic debris and bacteria, archaea and small protists.
- some are predators by catching small crustaceans on hooks that project from the body.

Movement:
- most dont move (sessile)
- most produce larvae that swim with the aid of cilia

Reproduction:
- asexual: small groups of adult cells can develop into a complete adult organism (*totipotent)
- other ways too
Cnidaria
Animalia

Basics:
- Jellyfish, coral Anemones, Hydroids
~11,000 species, mostly marine
- important predators
- 4 main lineages; 1. Hydrozoa (hydroids), 2. Cubozoa (box jellyfish), 3. Scyphozoa (jellyfish), 4. Anthozoa (anemones, corals and sea pens).
- many are radically symmetrical diploblasts consisting of layers that sandwich jelly material called MESOGLEA
- have a gastrovascular cavity which if for ingestion and waste

Feeding:
- CNIDOCYTE: a specialized cell used in prey capture
- when they sense a prey, they eject a barbed spear-like structure which may contain toxins, brought to mouth and injected
- also host photosynthetic dinoflagellates which supply them with food in exchange for protection

Movement:
- simple muscle-like tissue & the gut cavity work together to contract or extend the body

Reproduction:
- polyps reproduce asexually by budding (new organism grow from existing individual), fission (organism splits to create two) or fragmentation (parts of an adult regenerate missing pieces to form a whole).
- sexual reproduction, gametes are released from the mouth and fertilization takes place in the water, where eggs hatch into larvae that swim via cilia
Mollusca (bivalvia)
Animalia

Basics:
- clams, mussels, scallops, oysters
- 2 seperate shells made of calcium carbonate secreted by mantle that open an close via attached muscles
- most in ocean, many freshwater forms
- clams burrow into sand or mud while oyster and mussels attach to rock or other solid surface, scallops live on surface of small substrates

Feeding:
- most are suspension feeders that rely upon a flow of water past their GILLS in order to take in small protists or animals

Movement:
- scallops can swim by clapping their shells together
- clams burrow with aid of a foot

Reproduction:
- most reproduce sexually: eggs & sperm are shed into water and fertilized eggs develop into larvae
Mollusca (gastropoda)
Animalia

Basics:
- snails, slugs and nudibranchs
- "belly-feet", large muscular foot on their ventral side that can be retracted into shell
- nudibranchs don't have a shell but have bright colors to warn predators of dangerous toxins

Feeding:
- RADULA: unique structure in their mouths to scrape away algae and other animals for consumption; usually covered with teeth made of chitin

Movement:
- waves of contraction down the length of the foot allow them to move by creeping

Reproduction:
- females can produce asexually by production of eggs, although sexual reproduction is more common
- sexually: internal fertilization with larvae either dispersing or in an egg case during maturation
Arthropoda
Animalia

Insects Basics:
- larvae of some species common in freshwater streams and ponds
- three tagmata: the head, thorax and abdomen.
- 3 pairs of walking legs used to walk run or swim on thorax & pair of wings usually (to fly)
- 4 mouth parts which make them able to feed in every way possible
- sexes are seperate; mating through direct copulation

Chelicerates Basics:
- Spiders, ticks, mites, horseshoe crabs, daddy longlegs, scorpions
- most terrestrial, some marine
- capture insects or prey
- muscles attached to exoskeleton help them move
- sexual reproduction with internal fertilization

Crustacean Basics:
- shrimp, lobster, crabs,m barnacles, isopods, copepods
- marine and freshwater environments
- head and thorax combined by CEPHALOTHORAX & the abdomen
- MANDIBLES: mouth parts that bite or chew
- limbs for movement are diverse
- male or female; sexual reproduction which internal fertilization

Myriapod Basics:
- millipedes, centipedes
- head region and a long trunk which segments
- mouthparts that can bite and chew
- live in rotting logs or other dead plants and all over terrestrial environments
- walk or run on their many legs, some species burrow
- sexes are separate and fertilization is internal
Chordata
Animalia

CHORDATE:
- opening to the throat called pharyngeal gill slits
- dorsal hallow nerve cord that runs the length of the body
- stiff and supportive but flexible rod called a notochord
- muscular, post-anal tail


VERTEBRATE:
- column of cartilaginous or bony structures called vertebrae, which form along the dorsal sides of the body
- a cranium or skull to enclose the brain
Mycelia
filamentous structures of fungi
yeasts
single-celled form of fungi
How do Mycelia grow? How does this affect its body shape?
they grow in the direction of food sources and die back in areas where food is running out. body shape changes almost continually throughout life.
Hyphae
(sing. hypha)
long, narrow filaments within a mycelium. they branch frequently and are broken into cell-like compartments via cross-walls called septa.
Heterokaryotic
each cell contains several haploid nuclei from different parents
dikaryotic
2 haploid nuclei, one from each parent.
septa
(sing. septum)
cross-walls that break hyphae into cell-like compartments without actually closing off segments. Gaps called pores enable materials to flow from one compartment to another.
coenocytic
lacks septa entirely
Mutalistic
vs.
Parasitic
vs.
Commensal
Mutalistic: benfits both species

Parasitic: one species benefits at expense of another

Commensal: one benefits, other is unaffected.
Endophytic Fungi
fingu that live in the aboveground parts of plants, much more common and diverse than previously suspected. most plants are covered with fungi.
ectomycorrhizal fungi (EMF)
usually species from the Basidiomycota, through some ascomycetes participate
arbuscular mycorrhizal fungi (AMF)
includes species from the Glomeromycota
what kingdoms eukaryotes/prokaryotes and which are purely unicellular, purely multicellular or both?
Bacteria:
-prokaryotes
- single-celled only

Archaea:
- Prokaryotes
- Single-celled only

Protista:
- Eukaryotes
- both (multi, uni and colonial)

Fungi:
- Eukaryotes
- Single and Multicellular

Plantae:
- eukaryotic
- multicellular

Animalia:
- eukaryotic
- multicellular
Which kingdom is the only kingdom without cell walls?

What are the other kindgoms cell walls made from?
- Animals do not have cell walls.

- Bacteria: peptidoglycan
- Archaea: peptidoglycan
- Protista: cellulose and other stuff
- Fungi: chitin
- Plants: cellulose
How does each kingdom obtain their food?

(i.e.: autotrophs, hetrotrophs, both)
- Bacteria: both
- Archaea: both
- Protista: both
- Fungi: heterotroph (absorption)
- Plantae: autotrophs (self-energizing)
- Animalia: heterotroph (ingestion)
Which four kingdoms have plasma membrane structure that includes a phosphate group and a fatty acid chain with an ester linkage?
1. Animalia
2. Plantae
3. Fungi
4. Protista
What are the plasma membrane structures of

- Archaea
- Bacteria

Are they stable in extreme environments?
- Archaea: glycerol, ETHER linkage
( not stable in extreme environments)

- Bacteria: D-glycerol, ester linkage
(stable in extreme environments)
What are the orders of the taxonomic levels?
- Domain
- Kingdom
- Phylum/Division
- Class
- Order
- Family
- Genus
- Species
Domains....
Archaea, Bacteria and Eukarya
Does evolution occur at the individual or population level?
the population level
3 Requirements for Natural Selection are...
1. Ability to select upon specific traits
2. Traits that are heritable
3. Variation among the traits
Genetic Drift is...
random changed in the genetic makeup of a population
4 keys points about evolution by natural selection....
1. Evolution is not progressive
2. Adaptations are not always perfect
3. Adaptations can't always happen
4. An organism is best adapted to its historical environment
the 2 types of archaea phyla that we are to know for the exam...
1. Euryarchaeota

2. Crenarchaeota
What is the difference between adaptations and acclimatizations?
Adaptations: changes in genetic makeup of species

Acclimatizations: summer coat vs. winter coat
Which kingdom includes many extremophiles?
Archaea
Which kingdom is known for containing hyphae and lichen?
Fungi
Which kingdom exhibits virtually all known methods of getting energy? (organotrophs, lithotrophs, phototrophs)
Bacteria
Bacteria's cell walls contain: _____

Gram-positive and Gram-negative cell walls differ in what ways?
- peptidoglycan

-Gram-positive: one inner membrane and a surrounding peptidoglycan layer
- Gram-negative: inner membrane, periplasm space with a peptidoglycan layer inside, and an outer membrane made up of lipopolysaccharide and protein.
How does an archaea cell membrane differ from bacteria/eukarya's cell membranes?

What are each made of?
Archaea cell membranes have an ETHER linkage while bacteria and eukarya's have an ESTER linkage.

ETHER = isoprenes
ESTER = fatty acids
Organotrophs get energy from...

Lithotrophs get energy from....

Phototrophs get energy from....
Orangotroph = organic molecules

Lithotrophs = inorganic molecules

Phototrophs = light
Fungi has two growth styles....
1. yeasts

2. Hyphae