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205 Cards in this Set

  • Front
  • Back
what is vitamin B1?
Thiamine

thiamin pyrophosphate
(active form)
with what reactions is thiamin pyrophosphate involved?
oxidative decarboxylation of alpha-ketoacids, PDH and alpha-KGDH

transketolase reaction
what is the cause of beriberi?
deficiency of thiamin (vitamin B1)
what is the cause of Wernicke encephalopathy?
deficiency of thiamin (vitamin B1)
what is the cause of Wernicke-Korsakoff syndrome?
severe deficiency of thiamin (vitamin B1)
what are the different manifestations of thiamin (vitamin B1) deficiency?
beriberi - standard deficiency

Wernicke encephalopathy - severe deficiency

Wernicke-Korsakoff syndrome - severe deficiency with memory deficit and psychosis
what are the symptoms of thiamin (vitamin B1) deficiency?
constipation
appetite suppression
nausea
peripheral neuropathy
mental depression
fatigue
cardiovascular defects
muscular defects
what part of the brain is responsible for emotion and memory?
limbic system
what is vitamin B2?
riboflavin
in what reactions is flavin necessary?
precursor for FMN and FAD

redox reactions
when do riboflavin (vitamin B2) deficiencies occur?
exposure to light causes decomposition of riboflavin

phototherapy treatments for hyperbilirubinemia are the cause of the rare cases of riboflavin deficiency
what is vitamin B3?
niacin
in what reactions is niacin (vitamin B3) necessary?
precursor for NAD and NADP

these serve as cofactors for numerous dehydrogenases
why is niacin (vitamin B3) not a true vitamin?
can be derived from tryptophan

this is inefficient
what disorders result from a deficiency of niacin (vitamin B3)?
pellagra
what deficiency causes pellagra?
niacin (vitamin B3) deficiency
what are the symptoms of niacin (vitamin B3) deficiency?
aka pellagra

weight loss, DIARRHEA, DEMENTIA, DERMATITIS
what treatments can cause niacin (vitamin B3) deficiency?
treatment of tuberculosis with isoniazid

nicotinic acid treatment of hypercholesterolemia
what is vitamin B5?
pantothenic acid
for what reactions is pantothenic acid (vitamin B5) required?
required for CoA, as well as for carbohydrate, fat and protein metabolism
what is vitamin B6?
pyridoxal
pyridoxamine
pyridoxine

pyridoxal phosphate (final product of all of the above)
what enzyme converts the inactive forms of vitamin B3 to pyridoxal phosphate?
inactive forms: pyridoxal, pyridoxamine, pyridoxine

active forms: pyridoxal phosphate

enzyme: pyridoxal kinase
what cofactor is required by pyridoxal kinase to convert vitamin B6 to its active form?
zinc
in what reactions is pyridoxal phosphate required?
cofactor in transamination reactions also for glycogen phosphorylase and GAD
what is PLP?
pyridoxal phosphate
what is GAD?
glutamic acid decarboxylase

enzyme required for GABA synthesis
what treatments can cause pyridoxal phosphate (vitamin B6) deficiency?
isoniazid treatment for tuberculosis

penicillamine treatment for rheumatoid arthritis

both complex with pyridoxal phosphate, causing deficiency
what vitamin deficiency has the broadest spectrum of effects?
vitamin B6 (pyridoxal phosphate)
in what reactions is biotin required?
carboxylation reactions as a cofactor

ex. acetyl-CoA carboxylase
ex. pyruvate carboxylase
what are the significant causes of biotin deficiency?
prolonged antibiotic treatment

raw eggs (contain avidin - a protein that strongly complexes biotin)
what is vitamin B7?
biotin
what is vitamin B12?
cobalamin
where is dietary cobalamin (vitamin B12) hydrolyzed from protein?
stomach by gastric acid

intestines by trypsin
what binds to cobalamin (vitamin B12) and allows it to be absorbed?
intrinsic factor
where is intrinsic factor secreted?
parietal cells of the stomach
where is cobalamin (vitamin B12) absorbed?
ileum
to what is cobalamin (vitamin B12) bound in the blood?
transcobalamin II

transported to liver
what two reactions require cobalamin (vitamin B12)?
methylmalonyl-CoA mutase;
enzyme involved in conversion of propionyl-CoA to succinyl-CoA
(hydrolysis of odd-numbered fats)

methionine synthase;
converting homocysteine to methionine
(nucleotide metabolism)
what is the effect of homocysteine on proteins?
highly reactive with proteins, therefore nearly always bound to proteins

thiolates proteins and leads to their degradation
what is indicated by elevated homocysteine levels (above 12uM)?
increased thrombosis and cardiovascular disease
what is caused by cobalamin (vitamin B12) deficiency?
pernicious anemia
what is pernicious anemia?
loss of blood cell production by marrow
what are the symptoms of pernicious anemia?
numbness
tingling
weakness
sore smooth tongue
anorexia
diarrhea
pallor of the skin and mucous membranes
what is the most important clinical role of folic acid?
dTMP synthesis (one carbon transfer reactions)

other roles: amino acid synthesis, nucleotide salvage
what is caused by folic acid deficiency?
megaloblastic anemia
what causes macrocytic anemia?
inability to make DNA during erythrocyte maturation
what is vitamin C?
ascorbic acid
what is the major function of ascorbic acid (vitamin C)?
it is a cofactor in the hydroxylation of proline residues of collagen

other reactions: catabolism of tyrosine, synthesis of epinephrine, synthesis of bile acids, steroidogenesis
what is caused by a deficiency of vitamin C?
scurvy

results primarily from poor diet
what vitamins are water soluble?
thiamine (B1)
riboflavin (B2)
niacin (B3)
pantothenic acid (B5)
pyridoxal phosphate (B6)
biotin (B7)
cobalamin (B12)
folic acid (B9)
ascorbic acid (C)
what vitamins are lipid soluble?
retinol, retinal, retinoic acid (A)
cholecalciferol (D)
tocopherols (E)
phylloquinone/menaquinone (K)
what is vitamin B9?
folic acid
from what is retinol derived? where?
beta-carotene in intestine
what enzyme catalyzes the interconversions between retinol and retinal?
retinaldehyde reductase
what is the function of retinaldehyde reductase?
catalyze the interconversions between retinol and retinal
what enzyme catalyzes the oxidation of retinal to retinoic acid?
retinaldehyde dehydrogenase (RALDH)
what is the function of retinaldehyde dehydrogenase (RALDH)?
catalyze the oxidation of retinal to retinoic acid
how is vitamin A delivered to the blood?
esterified to palmitic acid and delivered to the blood in chylomicrons
to what is retinol bound when transported from the liver?
aporetinol binding protein (RBP)
to what is retinol bound while traveling in plasma?
albumin
to what is retinol bound inside extra-hepatic cells?
cellular retinol binding protein (CRBP)
what two proteins couple to form rhodopsin?
11-cis-retinal

scotopsin
what is the function of rhodopsin?
initiates first steps in perception of light
to what G-protein is rhodopsin coupled?
transducin
what happens when rhodopsin is exposed to light?
11-cis-retinal is converted to all-trans, activating transducin and leading to increased GTP binding

activate cGMP phosphodiesterase, closing Na channels and leading to hyperpolarization of the rod cell
what is the function of cGMP in rod cells of the eyes?
maintains Na channels in the open state
what is caused by retinoic acid (vitamin A) deficiency?
night blindness

increased susceptibility to infection and cancer

progressive keratinization of the cornea (xerophthalmia)
what is vitamin D?
cholecalciferol
from what is cholecalciferol (vitamin D3) formed? how?
7-dehydrocholesterol

uv exposure
what happens to cholecalciferol after it is formed from 7dehydrocholesterol?
transported to liver, converted to 25-OH then to kidney for conversion to 1,25-(OH)2 (aka calcitriol)
what is the function of calcitriol?
regulates serum calcium and phosphorous levels in concert with PTH and calcitonin

increases the level of calcium (Ca2+) in the blood by (1) increasing the uptake of calcium from the gut into the blood, (2) decreasing the transfer of calcium from blood to the urine by the kidney, and (3) increasing the release of calcium into the blood from bone
what is caused by a deficiency in vitamin D?
rickets in children
osteomalacia in adults
what is vitamin E?
mixture of compounds known as tocopherols
what is the major storage site of tocopherol (vitamin E)?
adipose tissue
what is the major function of tocopherol (vitamin E)?
antioxidant - scavenges peroxy-free radicals
how is tocopherol (vitamin E) excreted?
conjugated to glucuronate and excreted in bile
how is tocopherol (vitamin E) regenerated?
transfers electrons to vitamin C
what are the three forms of vitamin K? where are they found?
K1 - phylloquinone - plants

K2 - menaquinone - bacteria

K3 - menadione - synthetic (in supplements)
what is the major function of phylloquinone/menaquinone (vitamin K)?
cofactor in the generation of gamma-carboxy-glutamate residues found in clotting factors II, VII, IX, and X
what is the function of the gamma-carboxy-glutamate residues in clotting factors II, VII, IX, and X?
calcium ion chelators
what clotting factors are affected by vitamin K?
prothrombin (II)
stable factor/proconvertin (VII)
antihemophilic factor B/christmas factor (IX)
stuart-prower factor (X)
when do vitamin K deficiencies usually occur? what do they cause?
maladsorptive diseases

clotting disorders
what are the levels of protein structure?
primary - amino acid sequence

secondary - highly regular local substructure (alpha helix/beta sheets)

tertiary - 3D structure of single subunit

quaternary - arrangement of subunits
what causes dark urine?
excess bilirubin in the blood
what is leukopenia?
reduction of white blood cells
what is thrombocytopenia?
abnormally low platelet count
what is MCV?
mean corpuscular volume

average volume of red blood cells

low value indicates low amount of hemoglobin in the cells
what is MCHC?
mean corpuscular hemoglobin content

how much hemoglobin is in red blood cells
what is the primary function of myoglobin?
store oxygen in muscle for release during periods of oxygen deprivation
what is the primary function of hemoglobin?
carry oxygen from lungs to tissues
how many subunits does myoglobin consist of?
1
how many subunitsdoes hemoglobin consist of?
4
(2 alpha and 2 beta)
to what part of hemoglobin does oxygen bind?
iron protoporphyrin IX
what is the T-state of hemoglobin?
"tense state"

reduced affinity for oxygen

hemoglobin without oxygen bound
what is the R-state of hemoglobin?
"relaxed state"

increased affinity for oxygen

hemoglobin with some oxygen bound, but not fully saturated
what are the four major regulators of the oxygen affinity of hemoglobin? how do they regulate the O2 affinity?
CO2 - decreases affinity
2,3-BPG - decreases affinity
H+ - decreases affinity
Cl - decreases affinity
why does fetal hemoglobin have a higher affinity for oxygen than does adult hemoglobin?
fetal hemoglobin has to take oxygen from mother's adult hemoglobin
other than oxygen, what gas is carried by hemoglobin?
carbon dioxide

hemoglobin carries 15% of carbon dioxide from tissues to the lungs
where on the hemoglobin molecules does carbon dioxide attach?
N-terminal residues of T-state hemoglobin
what is carbamino hemoglobin?
hemoglobin in the T-state with carbon dioxide attached to the N-terminal residues
in the lungs, what force drives the release of CO2 from hemoglobin?
high pO2
what is the Bohr effect (as it applies to hemoglobin in blood cells at the tissues)?
CO2 from tissues enters RBCs

carbonic anhydrase converts CO2 and water to carbonic acid

carbonic acid spontaneously dissociates to bicarb and proton

proton binds to hemoglobin at histidine residues and drives release of oxygen to tissue
what is a qualitative hemoglobinopathy?
sickle cell anemia (HbS)
what is a quantitative hemoglobinopathy?
alpha-thalassemia
beta-thalassemia
what is the difference between having sickle cell anemia and sickle cell trait?
patients with sickle cell anemia are homozygous for the single nucleotide defect in the beta-hemoglobin gene, whereas patients with the sickle cell trait are heterozygous for the defect
what is the main characteristic of sickle cell anemia?
hemolytic anemia

deoxy HbS causes characteristic sickle shape of RBCs and reduces deformability or the cells; this limits their ability to move through capillaries, so they get stuck, die, and are lysed
what is a hematocrit?
volume of packed red blood cells
percent of blood volume that is occupied by red blood cells

normal = 36%-50%
what is icterus?
jaundice
(especially in the sclera of the eyes)
what is reticulocytosis?
increased immature red cells
what is Hb Bart's?
hemoglobin with all alpha-subunits absent; it precipitates in cells forming inclusion bodies
what are the symptoms of Hb Bart's?
inclusion bodies
no O2 carrying capacity
heart failure in utero

marked edema (hydrops fetalis)
what is HbH disease?
disease caused by absence of three alpha-hemoglobin subunits
what are the alpha thalassemias?
HbH disease (absence of 3 alpha-hemoglobin subunits)

Hb Bart's (absence of all alpha-hemoglobin subunits)
what is the cause of thalassemias?
alpha-thalassemia - absence of some/all alpha subunits

beta-thalassemia - absence of some/all beta subunits
what is the normal range for HbA1c?
4-7%
to what family of proteins do the glucose transport proteins belong?
solute carrier family 2 (SLC2A)
which glucose transporter is ubiquitously expressed in all tissues?
GLUT1
which glucose transporter is found in the intestine, kidney, liver, beta-cells?
GLUT2

aka "glucose sensor" because it mediates increase in glucose uptake
which glucose transporter is found in neurons?
GLUT3
which glucose transporter has the maximum Km value?
GLUT3

glucose transporter found in neurons
which glucose transporter is found in adipose tissue and skeletal muscle?
GLUT4
which glucose transporter is induced to mobilize to the surface by insulin in insulin-sensitive tissues?
GLUT4
what transporter is the fructose transporter in the intestine, testes, kidney, adipose tissue, skeletal tissue, and brain?
GLUT5
what enzyme phosphorylates any 6-carbon sugar?
hexokinase
what enzyme phosphorylates only glucose?
glucokinase
what is the average resting blood glucose?
5 mmol/L

100 mg/dL
what is Km?
concentration of substrate at which the enzyme is operating at 1/2 of Vmax
how does hexokinase differ from glucokinase?
hexokinase has a lower Km

hexokinase phosphorylates all 6-carbon sugars, whereas glucokinase phosphorylates only glucose

hexokinase is product-inhibited by G6P, whereas glucokinase is not
what is the definition for kinetics?
the study of the rate of change of reactants to products
what is the definition of velocity as it refers to enzymes?
change in concentration of substrate or product per unit time
what is the definition of rate as it refers to enzymes?
change in total quantity per unit time
what are the three basic assumptions for the michaelis-menten equation?
1: ES complex is in a steady state (remains constant during initial phase of a reaction)

2: under saturation conditions, all E is in ES complex

3: if all E is in ES complex then rate of product formation is maximal
what is the significance of Km?
low Km means more efficient conversion of substrate to product

high Km means less efficient conversion of substrate to product
what are the dependent and independent variables in a Michaelis-Menten plot?
dependent - velocity

independent - [substrate]
what are the dependent and independent variables in a Lineweaver-Burk plot?
dependent - 1/v

independent - 1/[substrate]
what is the significance of the x-intercept in a Lineweaver-Burk plot?
x = -1 / Km
what is the significance of the y-intercept in a Lineweaver-Burk plot?
y = 1 / Vmax
what is the significance of the slope in a Lineweaver-Burk plot?
m = Km / Vmax
what is competitive inhibition?
inhibitor which binds at substrate site

inhibition is reversible as higher substrate competes for inhibitor

Vmax is unchanged
Km is increased
what is non-competitive inhibition?
inhibitor binds at site other than substrate

ESI cannot form product; increased substrate does not compete

Km is unchanged
Vmax is decreased
what is un-competitive inhibition?
inhibitor only binds to ES complex due to binding site only becoming available when substrate is bound

Km is decreased
Vmax is decreased
compare the Lineweaver-Burk plot of an enzyme without inhibition to one with a competitive inhibitor
the Lineweaver-Burk plot of a competitive inhibitor has the same y-intercept as an uninhibited enzyme, but has a greater slope
compare the Lineweaver-Burk plot of an enzyme without inhibition to one with a noncompetitive inhibitor
with a noncompetitive inhibitor, the x-intercept is the same between the two plots, but the slope is greater in the noncompetitive inhibitor than in the uninhibited plot
compare the Lineweaver-Burk plot of an enzyme without inhibition to one with a un-competitive inhibitor
x-intercept is less in un-competitive inhibitor

y-intercept is greater in un-competitive inhibitor

slope is same between un-competitive inhibitor and uninhibited enzyme
where in the cell do glycolysis reactions occur?
in cytosol
what is the rate-limiting enzyme in glycolysis?
phosphofructokinase-1 (PFK-1)
what is the first enzyme in glycolysis?
hexokinase/glucokinase
what is the function of phosphohexose isomerase?
interconversions between G6P and F6P
what is the function of PFK-1 (phosphofructokinase-1)?
convert F6P to F1,6BP
what is the function of aldolase A?
hydrolyze F1,6BP to DHAP and glyceraldehyde-3-phosphate

enzyme in glycolysis
what is the function of triosephosphate isomerase?
interconversions between DHAP and glyceraldehyde-3-phosphate

enzyme in glycolysis/gluconeogenesis
what is DHAP?
dihydroxyacetone phosphate
what is the function of glyceraldehyde-3-phosphate dehydrogenase?
interconversions between glyceraldehyde-3-phosphate and 1,3-bisphosphoglycerate
what is the function of phosphoglycerate kinase?
interconversions between 1,3-bisphosphoglycerate and 3-phosphoglycerate
what is the function of posphoglycerate mutase?
interconversions between 3-phosphoglycerate and 2-phosphoglycerate
what is the function of enolase?
interconversions between 2-phosphoglycerate and phosphoenolpyruvate
what is the function of pyruvate kinase?
conversion of phosphoenolpyruvate to pyruvate
what is the glycerol phosphate shuttle?
The glycerol-3-phosphate shuttle is a mechanism that regenerates NAD+ from NADH, a by-product of glycolysis. Its importance in transporting reducing equivalents is secondary to the malate-aspartate shuttle.
what is AST?
aspartate transaminase

aka SGOT (serum glutamate oxylate transaminase)
what is ALT?
alanine transaminase

aka SGPT (serum glutamic pyruvic transaminase)
what is the malate-aspartate shuttle?
The malate-aspartate shuttle (sometimes also the malate shuttle) is a biochemical system for translocating electrons produced during glycolysis across the semipermeable inner membrane of the mitochondrion for oxidative phosphorylation in eukaryotes.
what three enzymes regulate glycolysis?
hexokinase
phosphofructokinase-1
pyruvate kinase
what are the activators of PFK-1?
AMP
F2,6BP (most potent)
what are the inhibitors of PFK-1?
ATP
citrate
when does PFK-2 act as a kinase?
when it is dephosphorylated
when does PFK-2 act as a phosphatase?
when it is phosphorylated
what enzyme phosphorylates PFK-2?
protein kinase A (PKA)
what are the two functions of PFK-2?
kinase: convert F6P to F2,6BP in conditions of excess glucose

phosphatase: convert F2,6BP to F6P in conditions of little glucose
what are the activators of pyruvate kinase?
F1,6BP
what are the inhibitors of pyruvate kinase?
ATP
acetyl-CoA
phosphorylation by PKA
alanine
how is PKA activated?
hormone binds to G-protein coupled receptor

G-protein activates adenylate cyclase, which converts ATP to cAMP

cAMP activates PKA
what hormone activates PKA via G-protein coupled receptor?
glucagon

epinephrine (beta receptors)
what is the two step process to convert ethanol to acetate?
alcohol dehydrogenase converts ethanol to acetaldehyde

acetaldehyde dehydrogenase converts acetaldehyde to acetate
lactose is a disaccharide of what two sugars?
glucose

galactose
maltose is a dimer of what sugars?
glucose
sucrose is a disaccharide of what two sugars?
fructose

glucose
what are the primary locations of fructose metabolism?
liver
kidney
small intestine
how is fructose phosphorylated?
fructokinase in liver to F1P

hexokinase in other tissues to F6P
what is the difference between aldolase A and aldolase B?
aldolase A: converts F1,6BP to glyceraldehyde-3-phosphate and DHAP

aldolase B: converts F1P to glyceraldehyde and DHAP
what is essential fructosuria?
deficiency of fructokinase in the liver
what is hereditary fructose intolerance?
deficiency of fructose-1-phosphate aldolase of liver, kidney cortex and small intestine
what are the three disorders in fructose metabolism?
essential fructosuria

hereditary fructose intolerance

hereditary fructose-1,6-BPase deficiency
essential fructosuria
autosomal recessive

asymptomatic, except hyperfructosemia and fructosuria
hereditary fructose intolerance
autosomal recessive

severe hypoglycemia, vomiting on fructose intake, asymptomatic with no fructose or sucrose
what is the treatment for hereditary fructose intolerance?
restrict fructose, sucrose, and sorbitol
fructose-1,6-BPase
autosomal recessive

severe impairment of gluconeogenesis, episodic hyperventilation due to acidosis, hypoglycemia, apnea, ketosis, lactic acidosis
what is GALE?
UDP-galactose epimerase

enzyme that converts UDP-galactose to UDP-glucose
what is GALK?
galactokinase

enzyme that converts galactose to galactose-1-phosphate
what is GALT?
UDP-glucose:galactose-1-phosphate uridylyltransferase

enzyme that exchanges glucose from UDP-glucose with galactose from galactose-1-phosphate
what is phosphoglucomutase?
enzyme that converts G1P to G6P
what are the three inherited disorders of galactose metabolism?
classic galactosemia due to loss of uridylyltransferase (GALT)

galactosemia due to loss of galactokinase (GALK)

epimerase deficiency
GALT deficiency
presents in first weeks after birth

poor feeding, weight loss, vomiting, diarrhea, lethargy

infants are jaundiced with hepatomegaly

liver dysfunction -> bleeding disorders; renal tubular disease
what is the treatment for GALT deficiency?
UDP-glucose:galactose-1-P uridylyltransferase deficiency

restrict galactose
GALK deficiency
galactokinase deficiency

consistent finding is cataracts

most symptoms resolve on galactose restriction
GALE deficiency
UDP-galactose epimerase deficiency

principal defect is in erythrocyte enzyme and tus is benign

severe form is very rare with symptoms of poor feeding, weight loss, vomiting, diarrhea, lethargy
what is the most significant regulator of gluconeogenesis?
F1,6BPase
what gluconeogenesis enzymes are necessary to bypass pyruvate kinase?
pyruvate carboxylase

PEP carboxykinase
what gluconeogenesis enzyme is necessary to bypass PFK-1?
fructose-1,6-bisphosphatase
what gluconeogenesis enzyme is necessary to bypass glucokinase/hexokinase?
glucose-6-phosphatase
what is the function of pyruvate carboxylase?
convert pyruvate to oxaloacetate
what is the function of PEP carboxykinase?
convert oxaloacetate to PEP
what is the function of fructose-1,6-bisphosphatase?
convert F1,6BP to F6P
what is the function of glucose-6-phosphatase?
convert G6P to glucose
what are the major gluconeogenic substrates?
amino acids (muscle protein breakdown)

lactate (muscle and RBCs)

glycerol (TAG breakdown)
what is the glucose-alanine cycle?
recycle process that carries waste nitrogen from muscle protein breakdown to the liver, where it can be discarded as urea