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85 Cards in this Set

  • Front
  • Back

What is science?

Science is the knowledge attained through study and practice

What is life?

Life is the quality that distinguishes vital characteristies from that which is not dead

Attibution of Living things

Complex Organization


Growth


Metabolism


Movement


Reproduction


Responsiveness

Biological Science

The study of life

Metabolism

The sum of all the chemical reations

Catabolism

Just uses free energy, the level of free release a lot of energy, when we eat


Energy goes down

Anabolism

Steriods, to make cell proteins and tissues, and cells, uphill energy. Build molecules, higher energy need lots of it.

ATP

Energy Currency

Scientific Method

Observe phenomena and formulate testable falsifiable hypotheses




Test hypotheses (observation vs experimentation)




Statistical analyses (in most cases)

Observation

Has to be testable and falsifiable



What is the goal of hypotheses?

Has to be testable and falsifiable

Evolution Definition

The concept that all organisms are related to each other by common ancestors

Mechanisms for evolution

Acquired characteristics: traits are acquired by chance over time



Lamack- Use, disuse hypothesis


EX: Giraffes used their necks more to reach food that was higher up leading to the more known long necked giraffe

Natural Selection

Charles Darwin

-Wrote in 1859, "On the Origin of species by means of natural selection"

-Was laughed at by many and refuted

Alfred Wallace

-Wrote a similar manuscript and sent it to Darwin which confirmed to Darwin that someone believed in his theory. Therefore Darwin published his book

Characteristics

Variation: different chracteristics from the other animals in your group


Adaptation: a trait that enables higher fitness and better chances of reproducing




The Galapagos


Darwin's Finches

Peppered Moth and industrial Melanism

The industrial revolution changed the way the adaptation worked for the moths. They came in 2 different colors by chance: dark and spotted but mainly white. The normal adaptation was for the white moth because the tree it would rest upon had lots of lichen on it making the moth hard to spot. When the industrial revolution kicked into gear it colored the trees dark with pollution making the characteristic of being dark on the tree an adaptation.

Overview of Evolution Via natural selection


  • Potential for Rapid reproduction
  • Relatively constant population size over time
  • Competition for survival and reproduction
  • Variability in structures and behaviors
  • Natural selection: On the average, the fittest organisms leave the most offspring
  • Some variability is heritable



Evolution:


The genetic makeup of the population


Changes over time


Driven by natural selection

Vertebrates show strong evidence of close evolutionary relationship

Ontogeny recapitulates phylogeny


Ontogeny: Development


Phylogeny: Evolutionary history related to other organisms

Artificial Selection

Domestication of plants and animals

Basic Chemisty of life


The Elements


98% of all living things have

92 naturally occuring


>100 total




(S)ulfur


(P)hosphorus- ATP (adenosine Triphosphate)


(O)xygen


(N)itrogen


(C)arbon- most important


(H)ydrogen- most important

Matter has 2 main components


Atoms are composed of....


Mass

Has Mass & Occupies space


Subatomic particles


Amount of material

Isoptopes

Different kinds of elements


Iso- means something similar


Over 300 occur naturally


Some are radioactive


3 isotopes for each elements, neutrons #'s vary







Half-life

Fossil aging


Medical Application

Atoms Chart


Atomic Mass= # of protons + # of neutrons 

# neutrons can vary but the number of protons & electrons balance 


Atomic Mass= # of protons + # of neutrons




# neutrons can vary but the number of protons & electrons balance

Period Table of the Elements

Half-life Chart

Electron Energy Levels

All Matter tends to go to the lowest energy level 

S- best room in the house

Only has 1 room/orbital (S) can hold 2 electrons
Has 4 rooms/orbitals (2S, Px, Py, Pz) that can hold 2 electrons each
Has 4 rooms/orbitals also but upwards to about 1...

All Matter tends to go to the lowest energy level




S- best room in the house





  1. Only has 1 room/orbital (S) can hold 2 electrons
  2. Has 4 rooms/orbitals (2S, Px, Py, Pz) that can hold 2 electrons each
  3. Has 4 rooms/orbitals also but upwards to about 18 electrons can fit on here

Atom Depictions/Models


Bohr vs Electron Cloud


  1. Electron Shells
  2. Orbitals
  1. Energy Levels
  2. Electron Cloud Models



Valence-only on the outermost portion




Orbital filling sequence rules



  • Only hold "1-2" electrons
  • Lowest energy levels fill first (usually)
  • Simple-shaped orbitals fill first
  • Similar orbitals each get 1 electron before any get 2

Energertic Tendencies

a. + & - charges balance


b. Electrons tend to pair


c. Electrons shells tend to fill




Noble gases have attained all these tendencies don't tend to react



How atoms attempt to fulfill the ET's

a. Gain electrons (reduction)


b. Lose electrons (oxidation)


c. Share electrons


Can't have reduction without oxidation


-sharing electrons




Ion: element that has either lost or gained an electron


Cation: + ion


Anion: - ion

Ionic bonds


Covalent bonds

A. One element takes the valence electrons of the other


B. Shared valence bonding

Electron Shells Chart

Electron Configuration

 

Model charts

Adaptations

When a variation in a species is useful

Compounds

A substance consisting of 2 or more elements combined in a fixed ratio


Ex. H2O

Carbon atomic number description

Atomic number 6:


The atomic number tells you how many protons there are total


Subtract the AMU's from the atomic number to find neutrons


For AMU round to the nearest whole number

Chemical Bonding

"The universal energetic tendency of all matter, regardless or its form, involves a "downhill" trend, tending towards lower energy levels."





Types of Covelent Bonds

Single: -2 electrons shared between the two elements


Double: -4


Triple: -6


"Octet rule"




Bond Polarity-


Polar: when a molecule is polarized, one end is positive (more protons) and one end is negative (more electrons)




Non-polar: when the pulling between electrons is equal so both sides have equal charges



Electronegativity- the ability for an atom to pull in electrons



Electronegativity Chart

Hydrogen bonds chart

Hydrogen bond Chart 2

Review of bonds chart

Effects of water polarity


  • The polarity of water molecules result in hydrogen bonding
  • Organisms depend on the cohesion of water molecules
  • Water moderates temperatures on earth
  • Oceans and lakes don't freeze solid because ice floats
  • Water is the solvent of life



Dissociation of water molecules



  • Organism are sensitive to changes in pH
  • Acid precipitation threatens the fitness of the environment

Water's dissolving power

Distributes important chemicals throughout the body 

Distributes important chemicals throughout the body

pH scale

pH- concentration of hydrogen ions 
7-water 

pH- concentration of hydrogen ions


7-water

Water dissociates

pH =


Negative of logarithm of hydrogen ion concentration:


10(-7)= 0.0000001


10(-6)= 0.000001


10(-8)=0.00000001




more hydrogens- acid-less OH


more OH- bases- less H when compared to OH




Acids= everything under 7


6 times more H ions than water


Bases= everything above 8


8 times less H (compared to OH counts) than water




Buffers: Minimizes the change in pH


Bicarbonate -buffer



Hydrogen and OH ions pic

Buffer range

Dehydration synthesis and hydrolysis chart

Chemical group chart

Carbon


The element of life

Versatile bonding properties


Functional groups


Macromolecules




Monomer vs polymer




Macromolecules synthesis/degradation


Dehydration synthesis


Hydrolysis




Usually covalent bonding sharing


Electrons uncouple when bonding

Carbohydrates

(CH2O)N


Hydrated Carbon


N= 5,6 (usually)


Monosaccharides- most have 6 carbons; monomer sugars


Isomers: fructose, glucose, galactose




Disaccharides- sucrose

Polysaccharides

Chitin


Starch


Cellulose


Glycogen

Lipids

1. “Hydrophobic” substances


2. Functions:


Energy storage


Heat Insulators


Lubricants


Hormones


Membranes


Buoyancy




3. Triglycerides


a.Glycerol


b. Fatty Acids


i. Saturated- every electron filled


ii. Unsaturated- not all saturated




Hydrogenation: trans fat


adding H to the unsaturated fats to make saturated by heating


Cis to trans fat through heat




“Each C-H bond is polar becausecarbon is more electronegative than hydrogen; however, each C-H bond in CH4 is arranged symmetrically (allangles are 109.5) so that the dipoles cancel outresulting in no net dipole for themolecule”



Phospholipids

Basis of the cell membrane

Head/tails- heads love water, tails hate water

Micelles- natural barrier

Phospholipid Bilayer

Cell membrane

Waxes- bees

Steroids

Hormones- all derived from cholesterol

You have to have cholesterol

Cholesterol

The good and bad:

i.Arteriosclerosis: a disease that restricts the arteries walls by lack of elasticity causing a lack of blood flow to vital organs and tissues, a type of this disease can also be caused by plaque, buildup, cholesterol and fat

HDLR- carry the cholesterol all over the place like a taxi cause it's hydrophobic.

LDL- stickier and has a tendency to clog up arteries

ii. Cell Membrane

iii. Fight Bacteria

iv. Fat Digestion- bile breaks down fat

v. Vitamin D- the only vitamin we can make

vi. Menstruation- essential for menstruation

*not all lipids are fats but all fats are lipids

Proteins

Long chains of amino acids


What makes an amine group different is the variable group R


a. Amino group


b. Carboxyl group


c. R group


d. Peptide bonds



Polypeptides




Functions


Structural


Energy Reserves


Hormones


Enzymes


Transport


Contractile


Receptor


Defensive: antibodies




Proteins 3-D structures: Every protein is based on 3D structures


All three types (carb, fat, protein) can store energy




a.Primary


b. Secondary


c. Tertiary: structure is the 3D structure that allows it to work


d. Quaternary: hemoglobin (myoglobin is one of all the 4 units)


Muscles have their own structure to capture oxygen




Hydrogen and Disulfide bonds



  • Hair folding is due to hydrogen and disulfide bonds
  • Individually hydrogen bonds are weak
  • Collectively hydrogen bonds are strong



Heat denatures the protein

Nucleic Acids

Long-chains


DNA= Deoxyribonucleic acid


RNA= Ribonucleic acid


*can sometimes act as an enzyme


A gene is almost always a portion of DNA that codes for protein




Single Nucleotides


i. ATP= Adenosine Triphosphate


ii. cAMP= Cyclic Adenosine monophosphate


iii. Coenzymes (e.g., NAD, NADP)

Summary of important biological macromolecules

Need to know the coenzymes

Electropositivity

Not real; he made it up, not a real question

Bonding

Nonpolar


Polar


Ionic


Covalent


Hydrogen- cohesion


*hydrogen bonds are what bonds DNA together


A to T


C to G

Heat

Dentauring a protein


Cal- the amount of energy required to change 1 milliliter of water 1 degree celsius




Heat energy


Temperature




* rate of movement of molecules


K cal-1000

Groups of Elements

Carabonyl


Carboxyl- forms an acid


Amino- will find carboxyl group


Phosphate- can go beyond the octet rule


Methyl- methane gas

Macromolecules

Large molecules weigh 1,000's of lbs

Monomer vs polymer

1 unit repeating units of monomers

Hydrolysis- add water to break bonds

Condensation reactions-dehydration synthesis takes away water

Isomers

Same elements but different structural forms

Fructose, Glucose, Galactose 
(isomer, monosaccharides)

Same elements but different structural forms




Fructose, Glucose, Galactose


(isomer, monosaccharides)



Derivatives

Something that is derived from something super basic

Electronegativity & Bonds

i. If the electronegativities are equal (i.e. if the electronegativity difference is 0), the bond is non-polar covalent


ii. If the difference in electronegativities between the two atoms is greater than 0, but less than 2.0, the bond is polar covalent


iii. If the difference in electronegativities between the two atoms is 2.0, or greater, the bond is ionic

Saturated Fat pic

Unsaturated Fat pic

Polarity chart

Cis and trans double bond pic

Trans Fat pic

Cholestrol pic

Phospholipid bilayer

Induction


Deduction

Specific to General


General to Specific

Hypothetico-deductive reasoning

The hypothetico-deductive model or method is a proposed description of scientific method.
According to it, scientific inquiry proceeds by formulating a hypothesis in a form that could conceivably be falsified by a test on observable data.

-OH

C=O

Ketone 
-C=O-H: Aldehyde

Ketone


-C=O-H: Aldehyde

-Cooh

-NH2

-SH

-PO4

-CH3

How many N's do Carbohydrates usually have

5,6 Nitrogens usually