Chromatin Lab Report

Improved Essays
Eukaryotes have much larger genomes than prokaryotes, and therefore, must condense their DNA into chromatin. Chromatin is composed of histone proteins that help to condense and organize the DNA forming chromosomes. The basic unit of this chromatin is a nucleosome, which contains about 150 base pairs of DNA that are wrapped 1.7 times around the core histone proteins. However, this tightly wrapped chromatin becomes a problem when regulatory proteins need access to specific sections of the DNA. The genes are “turned off” to transcription by this physical structure until the needed section of chromatin is unwrapped, thus removing the obstacle. Once this unraveling occurs, the gene is turned on and transcription can begin [14].
Transcription, the first step in the process of creating a protein, copies the nucleotide sequence of DNA into a strand of RNA. RNA polymerase (Pol II) attaches to the chromosome and unwinds the two strands of DNA as it moves across the gene. This protein reads one strand of DNA, using it as a template, and attaches the complementary ribonucleotides. After Pol II completes transcription in one section, it rewinds the two strands back together. This process continues until the gene is completely transcribed, and a strand of RNA is created [14]. Our experiment studied the proteins
…show more content…
coli cells were purified. The plasmid mini-preparation was done using the Qiagen kit to create a solution with purified plasmid DNA. Restriction enzyme digestion reactions used 8 μl of purified plasmid DNA, the EcoRV enzyme, and a cocktail [2]. Then agarose gel electrophoresis, using 1% agarose gel, was done on the digested plasmids [3]. Agarose gel electrophoresis displays the distances that the products had traveled, thus revealing the size of the products. This technique determined if the plasmid digestion worked properly, and the expected plasmids were obtained. Two bands, one at 603 bp and one at 2046 bp, should have

Related Documents

  • Improved Essays

    Prokaryote DNA replication is a semi conservative, bidirectional, template driven process. The phrase ‘semi-conservative’ refers to the fact that the newly synthesised double stranded DNA is made up of one parental (existing) strand, and one newly synthesised strand. The parental duplex is not ‘conserved’ as an entity. This was proved by the Meselson-Stahl experiment by replicating E.Coli in different mediums of of different Nitrogen isotopes. The results consisted of half of normal weight and half with intermediate weight, proving an immortal strand serving as an unchanging template.…

    • 400 Words
    • 2 Pages
    Improved Essays
  • Improved Essays

    3.05 Dna Research Paper

    • 522 Words
    • 3 Pages

    Assignment 3.05 DNA DNA, deoxyribonucleic acid, is the stuff in humans and almost all other organisms. About every cell in you and everyone else's body has the same DNA. DNA is usually located in the cell nucleus (nuclear DNA),however small amounts of DNA can be found in the mitochondria (mitochondrial DNA or mtDNA). The DNA has information stored as a code created by four chemical bases: adenine (A), cytosine (C), guanine (G), and thymine (T). Each base is connected to a sugar molecule and phosphate molecule.…

    • 522 Words
    • 3 Pages
    Improved Essays
  • Improved Essays

    Cra Gene Lab Report

    • 801 Words
    • 4 Pages

    Escherichia coli DH5훂 is the third species being studied. Since E. coli bacteria are considered model organisms, they make perfect study subjects. This particular strain of E. coli is not considered a pathogen. It was made especially for laboratory study. It’s main use has been mostly for cloning.…

    • 801 Words
    • 4 Pages
    Improved Essays
  • Superior Essays

    Bsrg1 Week 1 Lab Report

    • 1912 Words
    • 8 Pages

    Putty was opened on lab computers on the first day of this lab. Next, the group used Putty to input potential restriction enzymes to see where they would cut the DNA, and how long each of these fragments was. The restriction enzymes observed through the program were AseI, BsrGI, ClaI, EcoRV, HindIII, HpaI, NcoI, and PvuII. The lab group then chose to use BsrGI for the experimental restriction enzyme since they believed it would make the mutant DNA linear since it would cut the plasmid once while leaving the wild-type DNA uncut and supercoiled. This would make the wild-type DNA travel faster through the agarose gel in gel electrophoresis.…

    • 1912 Words
    • 8 Pages
    Superior Essays
  • Improved Essays

    The first step was to streak the bacterium with a sterilized look onto a Mueller Hinten plate. The MH plate was incubated at 37 degrees Celsius for 48 hours. Upon return and observation, the MH plate did not isolate the colony enough to be able to test the bacterium. The professor then handed an alternate 10 that was a pure culture to streak. It was with a sterilized loop that some of the pure culture was taken out and gram stained as directed by the laboratory manual (1).…

    • 1057 Words
    • 5 Pages
    Improved Essays
  • Improved Essays

    An open promoter complex is formed when DNA unwinds in this area and RNA synthesis starts because of a holenzyme. This is where regulation really comes into play, because transcription will continue as long as it has enough of what it needs until it hits a termination sequence. After which, the brand new produced RNA and enzyme are let go from the template. Until then, the…

    • 982 Words
    • 4 Pages
    Improved Essays
  • Improved Essays

    After cooling to 60°C, 1X GelRed (Biotium) was added, and the solution was poured into a gel casting tray with a 15-lane comb. Once the gel had set, it was placed in the running apparatus (Bio-Rad) and submerged with 1X TAE buffer. DNA samples were prepared for loading by adding 1X DNA loading buffer (Fermentas, Life Technologies, 10mM Tris-HCl (pH7.6), 0.03% bromophenol blue, 0.03% xylene cyanol, 60% glycerol, 60mM EDTA). A 1kb ladder was loaded first followed by the DNA samples. The gel was operated at 100 volts for 30 minutes, and the results were visualized using a UV transilluminator (Kodak EDAS 290).…

    • 742 Words
    • 3 Pages
    Improved Essays
  • Improved Essays

    A plasmid is circular, relatively small in size, double stranded as a DNA molecule, and is physically distinct from the chromosomal DNA of a cell. Innately found in prokaryotic bacterial cells, plasmids can sometimes be found in eukaryotes as well 1. Plasmids are self-replicating; therefore, when a plasmid is formed, infinite copies of the plasmid can be created if the plasmid is grown in bacteria. 2 Because of the size of plasmids, which can range anywhere from one thousand base pairs up to hundreds of thousands of base pairs, they are relatively easy to work with as modern technology has made the process of both establishing and adjusting plasmids to incorporate the genetic material of interest rather easy.…

    • 831 Words
    • 4 Pages
    Improved Essays
  • Decent Essays

    The difference between Euchromatin &Heterochromatin is: 1) The euchromatin is less intense than heterochromatin which means that heterochromatin has more stringent DNA packing 2) Heterochromatin contains more DNA than euchromatin 3) Euchromatin has more lightly packed form of chromatin than heterochromatin 4) In structure, heterochromatins contains inactive satellite sequences, and many genes are repressed to various extents, centromeres and telomeres. Where some cannot be expressed in euchromatin at all. 5) Under the optical microscope euchromatin is represented as light-colored bands while heterochromatin is represented as dark-colored bands 6) Euchromatin is found in eukaryotes and prokaryotes (in eukaryote cells with nuclei and in prokaryotes…

    • 155 Words
    • 1 Pages
    Decent Essays
  • Improved Essays

    Gel electrophoresis is a method used for separation and analysis of molecules such as DNA, RNA, and proteins, based on their sizes and polarity. DNA (deoxyribonucleic acid) is a molecule that carries most of our genetic information, and possesses a negative charge. During gel electrophoresis, DNA fragments can migrate through the gel also known as agarose when placed in a powerful electrical field. The rate at which the DNA fragments will move through the gel depends on their relative size. Horizontal gel slabs are commonly used on conducting gel electrophoresis.…

    • 1612 Words
    • 7 Pages
    Improved Essays
  • Improved Essays

    Epigenetic Lab Report

    • 694 Words
    • 3 Pages

    Epigenetics is defined as the study of changes in organisms resulting from modifications in gene expressions. The use of stem cells prove to be a vital part in the course of Epigenetics. Stem cells are characterized by two traits. They are self-renewal, able to divide into more identical cells and pluripotency, which allow the cells to become any kind of cell such as Erthrocyte or osteoclast. The relationship between epignetics and stem cells paved a pathway to an experiment relating to the relationship between TET, a protein that oxidizes certain kinds of DNA and stems cells and its properties when it is both modified and unmodified, by OGT, an enzyme that modifies other proteins with different materials such as sugar.…

    • 694 Words
    • 3 Pages
    Improved Essays
  • Improved Essays

    The sequence of transcription starts with the Enzyme Helicase being able to attach to the DNA double helix. By attaching to the double helix, it means that the enzyme helicase is able to unwind the DNAs double helix which enables part of the DNA code that is needed for the protein is then exposed which enables it to be transcribed. The DNA is now unwound in the area that is needed so the RNA polymerase is able to help line up the nucleotides to create a complementary strand of the mRNA. Between the strands there are hydrogen bonds which are then separated apart. One of the strands is then able to be used as a template strand.…

    • 1018 Words
    • 5 Pages
    Improved Essays
  • Improved Essays

    Pglo Lab Report

    • 1131 Words
    • 5 Pages

    Purpose: The overall goal of this lab was to perform a procedure on E. Coli which involved transferring genes that encoded for the green fluorescent protein into E. Coli to see if the transferred genes would make a difference on the growth and whether or not the bacteria would glow under UV light. Hypothesis: If the bacteria with the pGLO plasmid was grown on a plate containing LB and ampicillin then the bacteria will grow but not glow under UV light. If the bacteria with the pGLO plasmid was grown on a plate containing LB, ampicillin, and arabinose then it will be able to grow and glow under UV light. If the bacteria without pGLO plasmid was grown on a plate containing LB and ampicillin then it will not be able to grow or glow under UV light.…

    • 1131 Words
    • 5 Pages
    Improved Essays
  • Improved Essays

    Dna Synthesis Lab Report

    • 1554 Words
    • 7 Pages

    Reverse Transcription of mRNA and Designing Primers for PCR: In this experiment, we will start by preparing the RNA template, the primer, and the reverse transcriptase. The primer should bind to the RNA template and the reverse transcriptase will then be annealed to the primer and it will start elongating the cDNA strand based on the original RNA template. In each part we prepared three different tubes: 1) RT positive control, 2) RT negative control, and 3) RNA negative control. The purpose of preparing 3 different tubes is to ensure that our product is not contaminated and also to confirm that we are getting the right bands, when we run our product through the gel.…

    • 1554 Words
    • 7 Pages
    Improved Essays
  • Superior Essays

    Gene Trap Essay

    • 1765 Words
    • 8 Pages

    The sequence enables that the integrated co-transcribed construct is recognized as an exon during processing of hnRNA to mRNA, so that can be present in the mRNA. Third important sequence in the construct is polyadenylation or polyA signal. This results in the braking of mRNA at this point, instead of extending into the following exons of the concerned gene. This prevents the degradation of mutated mRNA. The artificial mRNA is therefore stable and the fusion protein therefore can be translated its presence is demonstrated.…

    • 1765 Words
    • 8 Pages
    Superior Essays

Related Topics